Streamlined Genetic Manipulation of Diverse Bacteroides and Parabacteroides Isolates from the Human Gut Microbiota

Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle

(2019) Edoardo Pasolli et al.   CELL

Identification of a Fifth Antibacterial Toxin Produced by a Single Bacteroides fragilis Strain

(2019) Andrew M. Shumaker et al.   JOURNAL OF BACTERIOLOGY

A New Suite of Allelic-Exchange Vectors for the Scarless Modification of Proteobacterial Genomes

(2019) Jacob E. Lazarus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A family of anti-Bacteroidales peptide toxins wide-spread in the human gut microbiota

(2019) Michael J. Coyne et al.   Nature Communications

Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering

(2018) Takayuki Arazoe et al.   Biotechnology Journal

Human Gut Microbiome: Function Matters

(2018) Anna Heintz-Buschart et al.   TRENDS IN MICROBIOLOGY

Targeted Nucleotide Editing Technologies for Microbial Metabolic Engineering

(2018) Takayuki Arazoe et al.   Biotechnology Journal

Stability of the human faecal microbiome in a cohort of adult men

(2018) Raaj S. Mehta et al.   Nature Microbiology

Genetic Variation of the SusC/SusD Homologs from a Polysaccharide Utilization Locus Underlies Divergent Fructan Specificities and Functional Adaptation in Bacteroides thetaiotaomicron Strains

(2018) Payal Joglekar et al.   mSphere

Acquisition of MACPF domain-encoding genes is the main contributor to LPS glycan diversity in gut Bacteroides species

(2018) Valentina Laclare McEneany et al.   ISME Journal

Deletion of BmoR affects the expression of genes related to thiol/disulfide balance in Bacteroides fragilis

(2018) Felipe L. Teixeira et al.   Scientific Reports

Translating microbiome futures

(2018) Gaspar Taroncher-Oldenburg et al.   NATURE BIOTECHNOLOGY

Erratum: Strains, functions and dynamics in the expanded Human Microbiome Project

(2017) Jason Lloyd-Price et al.   NATURE

Gut Symbiont Bacteroides fragilis Secretes a Eukaryotic-Like Ubiquitin Protein That Mediates Intraspecies Antagonism

(2017) Maria Chatzidaki-Livanis et al.   mBio

An insider's perspective: Bacteroides as a window into the microbiome

(2017) Aaron G. Wexler et al.   Nature Microbiology

Changes in the antibiotic susceptibility of anaerobic bacteria from 2007–2009 to 2010–2012 based on the CLSI methodology

(2016) Christine J. Hastey et al.   ANAEROBE

Counterselection employing mutated pheS for markerless genetic deletion in Bacteroides species

(2016) Yasuhiro Kino et al.   ANAEROBE

Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements

(2016) Michael J. Coyne et al.   BMC GENOMICS

Extensive Mobilome-Driven Genome Diversification in Mouse Gut-AssociatedBacteroides vulgatusmpk

(2016) Anna Lange et al.   Genome Biology and Evolution

The evolution of cooperation within the gut microbiota

(2016) Seth Rakoff-Nahoum et al.   NATURE

Bacteroides fragilistype VI secretion systems use novel effector and immunity proteins to antagonize human gut Bacteroidales species

(2016) Maria Chatzidaki-Livanis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacteroidales Secreted Antimicrobial Proteins Target Surface Molecules Necessary for Gut Colonization and Mediate Competition In Vivo

(2016) Kevin G. Roelofs et al.   mBio

Recent evolution of antibiotic resistance in the anaerobes as compared to previous decades

(2015) Lyudmila Boyanova et al.   ANAEROBE

From Hype to Hope: The Gut Microbiota in Enteric Infectious Disease

(2015) Peter T. McKenney et al.   CELL

Bacterial CRISPR: accomplishments and prospects

(2015) Jason M Peters et al.   CURRENT OPINION IN MICROBIOLOGY

Dps and DpsL Mediate SurvivalIn VitroandIn Vivoduring the Prolonged Oxidative Stress Response in Bacteroides fragilis

(2015) Michael I. Betteken et al.   JOURNAL OF BACTERIOLOGY

Harnessing CRISPR–Cas systems for bacterial genome editing

(2015) Kurt Selle et al.   TRENDS IN MICROBIOLOGY

Mechanisms of antimicrobial resistance in Gram-negative bacilli

(2015) Étienne Ruppé et al.   Annals of Intensive Care

Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota

(2015) Mark Mimee et al.   Cell Systems

Evidence of Extensive DNA Transfer between Bacteroidales Species within the Human Gut

(2014) M. J. Coyne et al.   mBio

An Ecological Network of Polysaccharide Utilization among Human Intestinal Symbionts

(2013) Seth Rakoff-Nahoum et al.   CURRENT BIOLOGY

The Long-Term Stability of the Human Gut Microbiota

(2013) J. J. Faith et al.   SCIENCE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Longitudinal Analysis of the Prevalence, Maintenance, and IgA Response to Species of the Order Bacteroidales in the Human Gut

(2011) Naamah Levy Zitomersky et al.   INFECTION AND IMMUNITY

Detection of resistance genes and susceptibility patterns in Bacteroides and Parabacteroides strains

(2010) Renata F. Boente et al.   ANAEROBE

Efficient Electrotransformation of Bacteroides fragilis

(2010) M. Ichimura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations

(2010) Erica D. Sonnenburg et al.   CELL

Antimicrobial susceptibility of Bacteroides fragilis group isolates in Europe: 20 years of experience

(2010) E. Nagy et al.   CLINICAL MICROBIOLOGY AND INFECTION

Genetic and Functional Analyses of the mob Operon on Conjugative Transposon CTn341 from Bacteroides spp.

(2010) L. Peed et al.   JOURNAL OF BACTERIOLOGY

Characterization of the Bacteroides CTnDOT Regulatory Protein RteC

(2010) J. Park et al.   JOURNAL OF BACTERIOLOGY

Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm

(2009) Eric C. Martens et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mucosal Glycan Foraging Enhances Fitness and Transmission of a Saccharolytic Human Gut Bacterial Symbiont

(2008) Eric C. Martens et al.   Cell Host & Microbe

Rhamnose catabolism in Bacteroides thetaiotaomicron is controlled by the positive transcriptional regulator RhaR

(2008) Ekta H. Patel et al.   RESEARCH IN MICROBIOLOGY

Starch Catabolism by a Prominent Human Gut Symbiont Is Directed by the Recognition of Amylose Helices

(2008) Nicole M. Koropatkin et al.   STRUCTURE