4.7 Article

Rapid detection of the bacterial biomarker pyocyanin in artificial sputum using a SERS-active silicon nanowire matrix covered by bimetallic noble metal nanoparticles

期刊

TALANTA
卷 202, 期 -, 页码 171-177

出版社

ELSEVIER SCIENCE BV
DOI: 10.1016/j.talanta.2019.04.047

关键词

Surface enhanced Raman spectroscopy (SERS); Silicon nanowires (SiNWs); Pyocyanin; Pseudomonas aeruginosa; Metabolite; Sputum

资金

  1. Federal Ministry of Education and Research, Germany (BMBF) [13GW0096F, 13N13856]
  2. Russian Science Foundation (RSF) [17-12-01386]
  3. Foundation for the Advancement of Theoretical Physics and Mathematics BASIS
  4. Russian Science Foundation [17-12-01386] Funding Source: Russian Science Foundation

向作者/读者索取更多资源

Early stage detection of Pseudomonas infections is life-saving, especially in the case of patients with cystic fibrosis. Pyocyanin (PYO) is a specific metabolite of the Pseudomonas aeruginosa bacteria, and detection of it directly in the sputum can significantly reduce the diagnosis time of the infection. In the present study, aiming to achieve this goal, a simple and cost-effective surface-enhanced Raman spectroscopy (SERS) detection platform was proposed. For this, a silicon nanowire (SiNW) matrix, produced by metal-assisted chemical etching of silicon substrates was variously modified by noble metal (silver and gold) nanoparticles (NPs) and tested for the detection of the metabolite PYO in the complex matrix of artificial sputum. We found the SERS substrate with Ag NPs on the bottom of SiNWs and deposited bimetallic Ag/Au NPs on the top of them the best suited for the sensitive detection of PYO. The investigated plasmonic substrate showed good point-to-point and batch-to-batch signal reproducibility and allowed for the detection of PYO in artificial sputum down to 6.25 mu M, which is the required sensitivity for clinical applications.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.7
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Review Biochemical Research Methods

Cyclodextrin-assisted surface-enhanced Raman spectroscopy: a critical review

Natalia E. Markina, Dana Cialla-May, Alexey V. Markin

Summary: The use of cyclodextrins (CDs) in surface-enhanced Raman spectroscopy (SERS) is still developing with less than 100 papers published since 1993. The review reveals controversial information about the efficiency of CDs in SERS analysis, and further experimental investigations are needed to estimate their real potential in SERS-based analysis.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2022)

Review Chemistry, Analytical

Raman Spectroscopy and Imaging in Bioanalytics

Dana Cialla-May, Christoph Krafft, Petra Roesch, Tanja Deckert-Gaudig, Torsten Frosch, Izabella J. Jahn, Susanne Pahlow, Clara Stiebing, Tobias Meyer-Zedler, Thomas Bocklitz, Iwan Schie, Volker Deckert, Juergen Popp

ANALYTICAL CHEMISTRY (2022)

Review Biochemistry & Molecular Biology

Aptamers: Potential Diagnostic and Therapeutic Agents for Blood Diseases

Maher M. Aljohani, Dana Cialla-May, Juergen Popp, Raja Chinnappan, Khaled Al-Kattan, Mohammed Zourob

Summary: Aptamers are RNA/DNA oligonucleotide molecules that specifically bind to targeted molecules. They have potential diagnostic and therapeutic applications for blood diseases and offer advantages over antibodies in terms of selection, production, modification, stability, and immunogenicity. Several aptamers have been developed and investigated in various biomedical areas. The pegaptanib sodium injection, an aptamer-based therapeutic, has been approved by the FDA for therapeutic use. Other aptamers are also in clinical trials. This review highlights the current status and promising aptamers in pre-clinical development for blood diseases.

MOLECULES (2022)

Article Materials Science, Multidisciplinary

Localization of Dps protein in porous silicon nanowires matrix

E. Parinova, S. S. Antipov, V Sivakov, E. A. Belikov, I. S. Kakuliia, S. Yu Trebunskikh, S. Yu Turishchev

Summary: Successful integration of ferritin Dps protein with silicon nanowires has been demonstrated, allowing effective removal of buffer solution salts while retaining ferritin Dps on the porous surface of silicon nanowires.

RESULTS IN PHYSICS (2022)

Article Materials Science, Multidisciplinary

Growth mechanism study of silver nanostructures in a limited volume

D. Yakimchuk, U. Prigodich, S. E. Demyanov, J. Ustarroz, H. Terryn, K. Baert, S. A. Khubezhov, D. Tishkevich, A. Trukhanov, V Sivakov, E. Yu Kaniukov

Summary: Template synthesis is a method for obtaining nanostructures with predetermined shapes and sizes. This study successfully created silver nanostructures with complex geometry by changing only the pore volume of the template without altering other chemical kinetic conditions, and the growth mechanism of these nanostructures was examined and discussed in detail.

MATERIALS CHEMISTRY AND PHYSICS (2022)

Article Chemistry, Physical

Silicon Nanowires Decorated with Silver Nanoparticles for Photoassisted Hydrogen Generation

Tingsen Ming, Benjamin Dietzek-Ivansic, Xiaoju Lu, Xiaohua Zuo, Vladimir Sivakov

Summary: This study investigates the effects of decorating highly n-doped silicon nanowires with silver nanoparticles on hydrogen generation. The results show that the presence of silver nanoparticles can enhance the efficiency of hydrogen generation, and the decorated silicon nanowires can maintain their morphology after hydrogen release.

ACS APPLIED ENERGY MATERIALS (2022)

Review Chemistry, Analytical

The Role of Surface Enhanced Raman Scattering for Therapeutic Drug Monitoring of Antimicrobial Agents

Stefano Fornasaro, Dana Cialla-May, Valter Sergo, Alois Bonifacio

Summary: This article presents a comprehensive review of various novel approaches based on surface-enhanced Raman scattering (SERS) for the direct and indirect detection and quantification of antibiotic, antifungal, and antituberculosis drugs in different matrices. The challenges for successful exploitation of this technique in the development of assays for point-of-care tests are particularly emphasized.

CHEMOSENSORS (2022)

Article Pharmacology & Pharmacy

Raman and fluorescence micro-spectroscopy applied for the monitoring of sunitinib-loaded porous silicon nanocontainers in cardiac cells

E. Tolstik, M. B. Gongalsky, J. Dierks, T. Brand, M. Pernecker, N. V. Pervushin, D. E. Maksutova, K. A. Gonchar, J. V. Samsonova, G. Kopeina, V. Sivakov, L. A. Osminkina, K. Lorenz

Summary: This study evaluated the effectiveness of drug delivery, release, and toxicity of pSiNPs nanocontainers in colon cancer cells and cardiac cells. The results demonstrated that pSiNPs effectively loaded and localized the drug within cells, and showed good tolerance and potential protective effects against toxicity in cardiac cells.

FRONTIERS IN PHARMACOLOGY (2022)

Article Materials Science, Multidisciplinary

Comparative Analysis of Raman Signal Amplifying Effectiveness of Silver Nanostructures with Different Morphology

Dzmitry Yakimchuk, Soslan A. Khubezhov, Uladzislau Prigodich, Daria Tishkevich, Sergei Trukhanov, Alex Trukhanov, Vladimir Sivakov, Egor Y. Kaniukov

Summary: This paper presents a detailed study on the influence of the shape of silver nanostructures on the efficiency of Raman signal amplification. It is found that silver crystals, dendrites, and sunflower-like nanostructures can be used for Raman signal amplification in SiO2/Si template, but with different efficiencies.

COATINGS (2022)

Article Biochemistry & Molecular Biology

Synthesis, Crystal, and Electronic Structure of (HpipeH2)2[Sb2I10](I2), with I2 Molecules Linking Sb2X10 Dimers into a Polymeric Anion: A Strategy for Optimizing a Hybrid Compound's Band Gap

Andrey V. Bykov, Tatiana A. Shestimerova, Mikhail A. Bykov, Liubov A. Osminkina, Alexey N. Kuznetsov, Victoria E. Gontcharenko, Andrei V. Shevelkov

Summary: By using X-ray crystal structure analysis, Raman and diffuse reflectance spectroscopies, and quantum chemical calculations, we synthesized a new polyiodoantimonate (HpipeH(2))(2)[Sb2I10](I-2) and investigated its crystal and electronic structure. We found that the compound has a 3D structure with a complex pattern of covalent bonds and non-covalent interactions, which provides a narrow band gap of 1.41 eV. This compound shows potential as a versatile tool for optimizing the band gap of light-harvesting materials.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

Article Optics

Optical Express Monitoring of Internalin B Protein of Listeria Monocytogenes Pathogenic Bacteria Using SERS-Active Silver-Decorated Silicon Nanowires

K. A. Gonchar, E. A. Alekseeva, O. D. Gyuppenen, I. V. Bozhev, E. V. Kalinin, S. A. Ermolaeva, L. A. Osminkina

Summary: In this study, a method of manufacturing composite nanostructures of silicon nanowires decorated with silver (AgSiNWs) was developed, and the SERS activity of AgSiNWs for protein detection was investigated using human serum albumin as an example. The possibility of rapid diagnosis of internalin B (InlB) protein of pathogenic bacteria Listeria monocytogenes by SERS using the obtained nanostructures was shown for the first time. Distinct peaks corresponding to Raman scattering on protein molecules were observed in the spectra of InlB adsorbed on AgSiNWs at different concentrations. The InlB detection limit was calculated to be 4.8 x 10(-9) M based on the experimental data.

OPTICS AND SPECTROSCOPY (2022)

Article Chemistry, Multidisciplinary

Spectromicroscopy Studies of Silicon Nanowires Array Covered by Tin Oxide Layers

Sergey Turishchev, Alexander Schleusener, Olga Chuvenkova, Elena Parinova, Poting Liu, Maxim Manyakin, Sergei Kurganskii, Vladimir Sivakov

Summary: The composition, atomic and electronic structure of a silicon nanowire array coated with tin oxide were studied. The results showed that tin-oxide nanocrystals of 20 nm in size formed a continuous and highly developed surface with a complex phase composition. The use of photoemission electron microscopy in XANES mode revealed that the entire SiNW surface is covered with a tin(IV) oxide layer and traces of tin(II) oxide and metallic tin phases.
Article Chemistry, Multidisciplinary

Nanostructured Silicon Matrix for Materials Engineering

Poting Liu, Alexander Schleusener, Gabriel Zieger, Arne Bochmann, Matthijs A. van Spronsen, Vladimir Sivakov

Summary: Tin-containing layers with different degrees of oxidation are uniformly distributed along the length of silicon nanowires formed by a top-down method. The electronic and atomic structure of the obtained layers is investigated using nondestructive X-ray absorption spectroscopy. The distribution effect of tin-containing phases in the nanostructured silicon matrix is demonstrated, and the amount and distribution of tin-containing phases can be varied and controlled by adjusting the geometric parameters.
Article Cell Biology

Sensing Cells-Peptide Hydrogel Interaction In Situ via Scanning Ion Conductance Microscopy

Tatiana N. N. Tikhonova, Vasilii S. S. Kolmogorov, Roman V. V. Timoshenko, Alexander N. N. Vaneev, Dana Cohen-Gerassi, Liubov A. A. Osminkina, Petr V. V. Gorelkin, Alexander S. S. Erofeev, Nikolay N. N. Sysoev, Lihi Adler-Abramovich, Evgeny A. A. Shirshin

Summary: In this study, scanning ion conductance microscopy (SICM) was used to investigate the growth of cells on self-assembled peptide-based hydrogels. The results demonstrated that SICM can serve as a tool for studying functional living cells.
Article Physics, Multidisciplinary

Optical Properties of Silicon Nanowires Obtained by Metal-Assisted Chemical Etching Using Gold Nanoparticles

K. A. Gonchar, I. V. Bozh'ev, O. A. Shalygina, L. A. Osminkina

Summary: Due to their unique structural and physical properties, silicon nanowires show great potential in various fields such as electronics, photovoltaics, photonics, sensors, and biomedicine. Among the available methods for synthesizing silicon nanowires, metal-assisted chemical etching is currently one of the most cost-effective approaches. This study uses gold nanoparticles as a catalyst to synthesize silicon nanowires by metal-assisted chemical etching of crystalline silicon. The resulting nanowires have a diameter of about 100 nm, consisting of a crystalline core of about 50 nm in diameter, coated with a SiO2 shell about 25 nm thick, and with silicon nanocrystals at the interface.

JETP LETTERS (2023)

Article Chemistry, Analytical

Enhancing electrochemiluminescence by modifying Fe3CuO4 and CdS@ZnS: A novel ECL sensor for highly sensitive detection of permethrin

Qian Wu, Li Tian, Xiangyu Shan, Huiling Li, Chao Li, Juan Lu

Summary: A novel ECL sensor was developed by modifying Fe3CuO4-Ru(bpy)3+ and GO-CdS@ZnS on the electrode for the detection of permethrin. The sensor exhibited high sensitivity and a wide detection range.

TALANTA (2024)

Article Chemistry, Analytical

Ag+-stabilized DNA triplex coupled with catalytic hairpin assembly and CRISPR/Cas12a amplifications for sensitive metallothionein assay

Tingting Gong, Lei Liao, Bingying Jiang, Ruo Yuan, Yun Xiang

Summary: In this study, a fluorescent biosensing system for high sensitivity detection of MT was established using a new Ag+-stabilized DNA triplex probe (Ag+-SDTP) combined with catalytic hairpin assembly (CHA) and CRISPR/Cas12a signal enhancements. The sensing method is able to selectively detect MT from other non-specific molecules and can achieve low level detection of MT in diluted human serums, demonstrating its potential for monitoring disease-specific MT biomarker at trace levels.

TALANTA (2024)

Article Chemistry, Analytical

Boron quantification using ion chromatography tandem triple quadrupole mass spectrometry. Application to retention analysis in boron-treated wood

Estrella Sanz Rodriguez, Kyra Wood, Paul R. Haddad, Brett Paull

Summary: This study presents a simple, rapid, and reliable method for determining boron in aqueous solutions using suppressed ion chromatography coupled to electrospray ionisation-triple quadrupole mass spectrometry. The method achieved a low limit of detection and demonstrated excellent analytical performance.

TALANTA (2024)

Article Chemistry, Analytical

Innovative SALDI mass spectrometry analysis for Alzheimer's disease synthetic peptides detection

Aline Cournut, Paul Moustiez, Yannick Coffinier, Christine Enjalbal, Claudia Bich

Summary: Alzheimer's disease is a major cause of senile dementia and is characterized by the aggregation of neurofibrillary tangles and amyloid plaques in the brain. The A beta 1-42 peptide is considered the primary cause of neurotoxicity due to its insolubility and subsequent aggregation. A beta 1-42 and A beta 1-40 have been identified as relevant biomarkers for AD diagnosis, and SurfaceAssisted Laser Desorption/Ionization Mass Spectrometry (SALDI-MS) was used to monitor the A beta 1-42/A beta 1-40 ratio without prior sample treatment.

TALANTA (2024)

Article Chemistry, Analytical

Deep eutectic solvents for the determination of endocrine disrupting chemicals

Dotse Selali Chormey, Buse Tugba Zaman, Tulay Borahan Kustanto, Sezin Erarpat Bodur, Suleyman Bodur, Elif Ozturk Er, Sezgin Bakirdere

Summary: This review provides an overview of the harmful effects of endocrine disrupting chemicals (EDCs) on human health and introduces the methods for analyzing EDCs. Recent research has focused on using green chemicals, such as deep eutectic solvents (DESs), for microextraction to ensure environmental safety.

TALANTA (2024)

Article Chemistry, Analytical

Nanopore-related cellular death through cytoskeleton depolymerization by drug-induced ROS

Yan Zhang, Renfeng Xu, Jingjing Wu, Zhenghong Zhang, Yuhuang Wang, Hongqin Yang, Sheng Zhang

Summary: This study visualized the pore-like structures in prostate cancer cell membranes after treatment with the anticancer drug paclitaxel, demonstrating its mechanism of action related to oxidative damage.

TALANTA (2024)

Article Chemistry, Analytical

CRISPR-empowered electrochemical biosensor for target amplification-free and sensitive detection of miRNA

Chihong Ma, Qin Zhou, Jinjin Shi, Hua Gao, Di Huang, Huimin Xue, Han Wang, Zhenzhong Zhang, Sen Yang, Junli Zhang, Kaixiang Zhang

Summary: We developed a CRISPR-empowered electrochemical biosensor, named PER-E-CRISPR, for amplification-free and sensitive detection of miR-21. The biosensor combines the advantages of CRISPR/Cas13a and primer exchange reaction (PER) for target amplification. Under optimized conditions, the PER-E-CRISPR assay exhibits a linear range from 10-13 to 10-7 M and a limit of detection of 30.2 fM. The biosensor shows excellent performance in actual plasma, indicating promising prospects for miRNA detection in molecular diagnosis.

TALANTA (2024)

Article Chemistry, Analytical

Application and evaluation of molecular docking for aptamer and small molecular interaction- A case study with tetracycline antibiotics

Gang Liang, Jie Zhao, Yufei Gao, Tao Xie, Jianhui Zhen, Ligang Pan, Wenwen Gong

Summary: Molecular docking (MD) analysis is widely used for studying the interaction between aptamers and small molecules. This study established steady-state aptamers of tertiary structures (SATS) using specific aptamers of tetracycline antibiotics as docking models. Molecular docking results revealed multiple binding sites in the SATS of aptamers, with significant variations in binding free energy (BFE) and docking score (DS). The study also proposed a method for MD analysis based on SATS, providing insights into binding mode and predicting binding sites.

TALANTA (2024)

Article Chemistry, Analytical

Highly bright stable organic radicals encapsulated by amphiphilic polypeptide for efficient near-infrared phototheranostics

Yixuan Xu, Changchang Teng, Huiping Dang, Dalong Yin, Lifeng Yan

Summary: Stable organic radical molecules with high NIR fluorescence quantum efficiency have been synthesized and encapsulated into nanoparticles, which show great potential for both photodynamic therapy (PDT) and photothermal therapy (PTT) of tumors.

TALANTA (2024)

Article Chemistry, Analytical

The construction of highly selective surface molecularly imprinted polymers based on Cu(II) coordination for the detection of bisphenol A

Yu Su, Dandan Yang, Yanjie Wang, Jie Ding, Lan Ding, Daqian Song

Summary: In this study, a highly selective molecularly imprinted polymer Cu-MIPs@CS was designed and synthesized for bisphenol A (BPA). Cu-MIPs@CS showed significantly enhanced imprinting factor and selective factor towards BPA compared to MIPs@CS. It also exhibited superior discrimination ability between BPA and its structural analogue. Additionally, Cu-MIPs@CS were successfully applied as a solid phase extraction adsorbent for the determination of BPA in drinking water samples.

TALANTA (2024)

Article Chemistry, Analytical

A simple joint detection platform for high-throughput single-cell heterogeneity screening

Yi Qiao, Qiongdan Zhang, Yukun He, Tianguang Cheng, Jing Tu

Summary: Single cell heterogeneity plays an important role in many biological phenomena, and distinguishing cells with specific mutations is beneficial for clinical diagnosis and drug screening. This study introduces a gel plate platform that can distinguish cell types based on their phenotypes, with low equipment requirement. The gel platform has potential in point-of-care circumstances and single-cell stimulation responses that prioritize efficiency and simplicity.

TALANTA (2024)

Article Chemistry, Analytical

Nanotechnology-based analytical techniques for the detection of contaminants in aquatic products

Chengke Wang, Shuyang Sun, Ping Wang, Huawei Zhao, Wenling Li

Summary: The food safety of aquatic products is a global concern. Nanotechnology-based analyses have advantages in the detection of bacteria, metal ions, and small molecule contaminants. This review summarizes the recent advances in biosensing strategies for aquatic products and highlights the application of nanomaterials, lateral flow-based biosensors, surface-enhanced Raman scattering, microfluidic chips, and molecular imprinting technologies.

TALANTA (2024)

Article Chemistry, Analytical

A sensitive off-on electrochemiluminescence DNA sensor based on signal cascade amplification circuit and distance-dependent energy transfer

Liping Zhu, Zeng Tang, Xuemei Zhang, Li Zhu, Tian Meng, Linying Yu, Ting Xiao, Shasha Lu, Xiaoli Xiong, Xiurong Yang

Summary: A sensitive off-on electrochemiluminescence DNA sensor was developed using Exo III-assisted cascade amplification system. The sensor achieved high selectivity and ultra-high sensitivity in detecting target DNA by utilizing ECL and SPR effects. This study provides a new perspective for designing highly sensitive and programmable ECL biosensors.

TALANTA (2024)

Article Chemistry, Analytical

A binary system based DNA tetrahedron and fluorogenic RNA aptamers for highly specific and label-free mRNA imaging in living cells

Tong Li, Mengxu Sun, Suping Xia, Ting Huang, Rong-Tian Li, Chunrong Li, Zong Dai, Jin-Xiang Chen, Jun Chen, Nuan Jia

Summary: Here, we developed a binary system based on DNA tetrahedron and fluorogenic RNA aptamers for highly specific and label-free mRNA imaging in living cells. This system achieved high specificity label-free detection of nucleic acids with a detection limit of 1.34 nM. The method has potential applications in early disease diagnosis and new drug development.

TALANTA (2024)

Article Chemistry, Analytical

Design and synthesis of hierarchical MnO-Fe3O4@C/expanded graphite composite for sensitive electrochemical detection of bisphenol A

Yao Zhao, Shu Zhang, Wang Yao, Yuxuan Zhu, Jing Qian, Juan Yang, Nianjun Yang

Summary: A new hierarchical nanostructured composite with high conductivity and catalytic activity is synthesized. The sensor exhibits significant catalytic effect and high sensitivity for monitoring the environmental endocrine disruptor bisphenol A (BPA).

TALANTA (2024)