标题
CiiiDER: A tool for predicting and analysing transcription factor binding sites
作者
关键词
Sequence motif analysis, Gene expression, Transcription factors, Mammalian genomics, Gene regulation, Graphical user interfaces, Transcriptional control, Genome analysis
出版物
PLoS One
Volume 14, Issue 9, Pages e0215495
出版商
Public Library of Science (PLoS)
发表日期
2019-09-05
DOI
10.1371/journal.pone.0215495
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A novel method for improved accuracy of transcription factor binding site prediction
- (2018) Abdullah M Khamis et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework
- (2017) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Regulation of H3K4me3 at Transcriptional Enhancers Characterizes Acquisition of Virus-Specific CD8 + T Cell-Lineage-Specific Function
- (2017) Brendan E. Russ et al. Cell Reports
- Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells
- (2016) Valentina Boeva Frontiers in Genetics
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- The MEME Suite
- (2015) Timothy L. Bailey et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets
- (2013) Andrew T. Kwon et al. G3-Genes Genomes Genetics
- The Next Generation of Transcription Factor Binding Site Prediction
- (2013) Anthony Mathelier et al. PLoS Computational Biology
- Silencing of Irf7 pathways in breast cancer cells promotes bone metastasis through immune escape
- (2012) Bradley N Bidwell et al. NATURE MEDICINE
- Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities
- (2010) A. Jolma et al. GENOME RESEARCH
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes
- (2009) Federico Zambelli et al. NUCLEIC ACIDS RESEARCH
- Evolutionary conservation of zinc finger transcription factor binding sites in promoters of genes co-expressed with WT1 in prostate cancer
- (2008) Kurtis Eisermann et al. BMC GENOMICS
- Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
- (2008) Xi Chen et al. CELL
- INTERFEROME: the database of interferon regulated genes
- (2008) Shamith A. Samarajiwa et al. NUCLEIC ACIDS RESEARCH
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started