rhizoTrak: a flexible open source Fiji plugin for user-friendly manual annotation of time-series images from minirhizotrons

Redefining fine roots improves understanding of below-ground contributions to terrestrial biosphere processes

(2015) M. Luke McCormack et al.   NEW PHYTOLOGIST

Next generation shovelomics: set up a tent and REST

(2015) Tino Colombi et al.   PLANT AND SOIL

Root System Markup Language: Toward a Unified Root Architecture Description Language

(2015) Guillaume Lobet et al.   PLANT PHYSIOLOGY

GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems

(2015) Rubén Rellán-Álvarez et al.   eLife

RootNav: Navigating Images of Complex Root Architectures

(2013) M. P. Pound et al.   PLANT PHYSIOLOGY

GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons

(2012) Kerstin A. Nagel et al.   FUNCTIONAL PLANT BIOLOGY

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Root taxa identification in plant mixtures – current techniques and future challenges

(2012) Boris Rewald et al.   PLANT AND SOIL

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

Biomass allocation to leaves, stems and roots: meta-analyses of interspecific variation and environmental control

(2011) Hendrik Poorter et al.   NEW PHYTOLOGIST

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

DART: a software to analyse root system architecture and development from captured images

(2009) Jacques Le Bot et al.   PLANT AND SOIL

Rapid automated detection of roots in minirhizotron images

(2008) Guang Zeng et al.   MACHINE VISION AND APPLICATIONS