AGO-unbound cytosolic pool of mature miRNAs in plant cells reveals a novel regulatory step at AGO1 loading

MicroRNAs and Their Regulatory Roles in Plant–Environment Interactions

(2019) Xianwei Song et al.   Annual Review of Plant Biology

Extensive profiling in Arabidopsis reveals abundant polysome-associated 24-nt small RNAs including AGO5-dependent pseudogene-derived siRNAs

(2019) Antonin Marchais et al.   RNA

Actions of plant Argonautes: predictable or unpredictable?

(2018) Zeyang Ma et al.   CURRENT OPINION IN PLANT BIOLOGY

Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway

(2018) Nicolas G. Bologna et al.   MOLECULAR CELL

The nonstop decay and the RNA silencing systems operate cooperatively in plants

(2018) István Szádeczky-Kardoss et al.   NUCLEIC ACIDS RESEARCH

Plant small RNAs: advancement in the understanding of biogenesis and role in plant development

(2018) Archita Singh et al.   PLANTA

Expansion of Capsicum annum fruit is linked to dynamic tissue-specific differential expression of miRNA and siRNA profiles

(2018) Dénes Taller et al.   PLoS One

The ‘how’ and ‘where’ of plant microRNAs

(2017) Yu Yu et al.   NEW PHYTOLOGIST

Integrated genome browser: visual analytics platform for genomics

(2016) Nowlan H. Freese et al.   BIOINFORMATICS

Structural determinants of miR156a precursor processing in temperature-responsive flowering in Arabidopsis

(2016) Wanhui Kim et al.   JOURNAL OF EXPERIMENTAL BOTANY

Salt Stress Reveals a New Role for ARGONAUTE1 in miRNA Biogenesis at the Transcriptional and Posttranscriptional Levels

(2016) Jakub Dolata et al.   PLANT PHYSIOLOGY

Improved Placement of Multi-mapping Small RNAs

(2016) Nathan R. Johnson et al.   G3-Genes Genomes Genetics

Biogenesis of phased siRNAs on membrane-bound polysomes in Arabidopsis

(2016) Shengben Li et al.   eLife

siRNA-directed DNA Methylation in Plants

(2015) Meng Xie et al.   CURRENT GENOMICS

MicroRNA: a new target for improving plant tolerance to abiotic stress

(2015) Baohong Zhang   JOURNAL OF EXPERIMENTAL BOTANY

The expanding world of small RNAs in plants

(2015) Filipe Borges et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

ARGONAUTE PIWI domain and microRNA duplex structure regulate small RNA sorting in Arabidopsis

(2014) Xiaoming Zhang et al.   Nature Communications

tasiRNAdb: a database of ta-siRNA regulatory pathways

(2013) Changqing Zhang et al.   BIOINFORMATICS

miRBase: annotating high confidence microRNAs using deep sequencing data

(2013) Ana Kozomara et al.   NUCLEIC ACIDS RESEARCH

Phased, Secondary, Small Interfering RNAs in Posttranscriptional Regulatory Networks

(2013) Q. Fei et al.   PLANT CELL

Biogenesis, Turnover, and Mode of Action of Plant MicroRNAs

(2013) K. Rogers et al.   PLANT CELL

Cytoplasmic Assembly and Selective Nuclear Import of Arabidopsis ARGONAUTE4/siRNA Complexes

(2012) Ruiqiang Ye et al.   MOLECULAR CELL

Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions

(2011) Huan Wang et al.   PLANT JOURNAL

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Plant virus-mediated induction of miR168 is associated with repression of ARGONAUTE1 accumulation

(2010) Éva Várallyay et al.   EMBO JOURNAL

Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis

(2010) Josh T Cuperus et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Form, Function, and Regulation of ARGONAUTE Proteins

(2010) Allison Mallory et al.   PLANT CELL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Identification of MicroRNA Processing Determinants by Random Mutagenesis of Arabidopsis MIR172a Precursor

(2009) Julieta L. Mateos et al.   CURRENT BIOLOGY

RNA Secondary Structural Determinants of miRNA Precursor Processing in Arabidopsis

(2009) Liang Song et al.   CURRENT BIOLOGY

Structure Determinants for Accurate Processing of miR172a in Arabidopsis thaliana

(2009) Schallum Werner et al.   CURRENT BIOLOGY

Biochemical Evidence for Translational Repression by Arabidopsis MicroRNAs

(2009) E. Lanet et al.   PLANT CELL

PatMaN: rapid alignment of short sequences to large databases

(2008) Kay Prüfer et al.   BIOINFORMATICS

Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide

(2008) Shijun Mi et al.   CELL

Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation

(2008) Taiowa A. Montgomery et al.   CELL

Improved northern blot method for enhanced detection of small RNA

(2008) Gurman S Pall et al.   Nature Protocols

MicroRNA detection by northern blotting using locked nucleic acid probes

(2008) Éva Várallyay et al.   Nature Protocols

Degradation of microRNAs by a Family of Exoribonucleases in Arabidopsis

(2008) Vanitharani Ramachandran et al.   SCIENCE