Article
Chemistry, Multidisciplinary
Biyue Zhu, Jing Yang, Richard Van, Fan Yang, Yue Yu, Astra Yu, Kathleen Ran, Keyi Yin, Yingxia Liang, Xunuo Shen, Wei Yin, Se Hoon Choi, Ying Lu, Changning Wang, Yihan Shao, Liang Shi, Rudolph E. Tanzi, Can Zhang, Yan Cheng, Zhirong Zhang, Chongzhao Ran
Summary: This study unexpectedly discovered several small molecules that can modulate antibody-epitope interactions, providing new possibilities for drug discovery and therapeutic modulation of auto-antibodies. The researchers also developed a new label-free screening technology for ligand discovery, which has multiple applications in biotechnology and drug discovery.
Article
Biochemistry & Molecular Biology
Guanghui Yang, Rui Zhou, Xuefei Guo, Chuangye Yan, Jianlin Lei, Yigong Shi
Summary: The development of GSIs and GSMs for Alzheimer's disease and cancer treatment presents a promising therapeutic opportunity. Cryo-electron microscopy structures reveal that these inhibitors and modulators target specific regions of gamma-secretase, interfering with substrate recruitment. Shared themes and variations in inhibitor and modulator recognition may guide the development of next-generation substrate-selective inhibitors.
Article
Chemistry, Medicinal
Werner Treptow
Summary: Membrane proteins can respond to various ligands under external stimuli, including small low-affinity molecules. Understanding the modulation of protein function by such ligands is challenging due to their multiple degenerate interactions with the protein. A new theoretical model based on the Boltzmann model is proposed, which allows the description of the equilibrium shifts of the protein in the presence of small low-affinity ligands. This model can be compared to experimental data at the atomic level, making it useful for interpreting protein-ligand interactions.
JOURNAL OF CHEMICAL INFORMATION AND MODELING
(2023)
Article
Chemistry, Medicinal
Werner Treptow
Summary: Membrane proteins respond to a variety of ligands, including small low-affinity molecules, under an external stimulus. Characterizing the atomic-level interactions between these ligands and membrane proteins at dilute concentrations is challenging. A new theoretical description based on the two-state Boltzmann model is developed to understand the allosteric modulation of membrane proteins in the presence of small low-affinity ligands and external stimuli. This model allows for the interpretation of experimental data at the atomic level.
JOURNAL OF CHEMICAL INFORMATION AND MODELING
(2023)
Article
Food Science & Technology
Feng-Qi Wang, Jun-Hu Cheng, Kevin M. Keener
Summary: This study proposed a new processing method combining cold plasma and glycation to investigate the effect on changing IgE binding capacity of tropomyosin (TM) from shrimp, which is the major allergen of shrimp (Penaeus chinensis). The results showed that the IgE binding capacity of TM was reduced by up to 40% after combined treatment, compared with single CP or glycation treatment. Therefore, the processing of CP pretreatment combined with glycation has the potential to reduce or even eliminate the allergenicity of seafood.
Article
Materials Science, Multidisciplinary
Cesar Ray, Carolina Diaz-Norambuena, Mizuki Johnson, Florencio Moreno, Beatriz L. Maroto, Jorge Banuelos, Gilles Muller, Santiago de la Moya
Summary: Modulating helical pitch in flexible BODIPY dimers allows tuning of circularly polarized luminescence. This reveals the significance of molecular-helix elongation in the design and modulation of CPL emitters and materials based on small, helical, and flexible organic multichromophoric molecules.
JOURNAL OF MATERIALS CHEMISTRY C
(2023)
Article
Neurosciences
Paige Mumford, Justin Tosh, Silvia Anderle, Eleni Gkanatsiou Wikberg, Gloria Lau, Sue Noy, Karen Cleverley, Takashi Saito, Takaomi C. Saido, Eugene Yu, Gunnar Brinkmalm, Erik Portelius, Kaj Blennow, Henrik Zetterberg, Victor Tybulewicz, Elizabeth M. C. Fisher, Frances K. Wiseman
Summary: This study found that in individuals with Down syndrome (DS), early onset Alzheimer's disease (AD) is associated with multiple copies of the APP gene on chromosome 21, while three copies of other genes on chromosome 21 can partially alleviate the accumulation of AP in the brain. This provides critical mechanistic insight into disease development and explains the typically later age of onset of dementia in DS individuals compared to those with familial AD caused by triplication of APP.
JOURNAL OF NEUROSCIENCE
(2022)
Article
Pharmacology & Pharmacy
Kannan Harithpriya, Ravichandran Jayasuriya, Trishla Adhikari, Awantika Rai, Kunka Mohanram Ramkumar
Summary: Transcription factors play crucial roles in regulating gene expression and development of pancreatic B-cells. Hyperglycemia can reduce the expression and/or activities of these transcription factors, leading to loss of B-cell function. Activating transcription factors using small molecules has shown promising results in regenerating and maintaining B-cell function and survival. This review discusses the various transcription factors involved in pancreatic B-cell development and the regulation of their activities in normal and pathological states, as well as the potential pharmacological effects of natural and synthetic compounds on these transcription factors.
EUROPEAN JOURNAL OF PHARMACOLOGY
(2023)
Article
Multidisciplinary Sciences
Chen Jin, Jiaoni Wang, Yumeng Wang, Bojun Jia, Xuefei Guo, Guanghui Yang, Peng Xu, Paul Greengard, Rui Zhou, Yigong Shi
Summary: In this study, researchers discovered that GSAP-16K can modulate the cleavage of APP by gamma-secretase through both dilute phase and condensate formation. The dilute phase of GSAP-16K promotes the production of Aβ42, while the condensates of GSAP-16K reduce the cleavage of APP-C99. Additionally, GSAP-16K stably associates with APP-C99 through specific sequence elements. These findings provide mechanistic insights into the modulation of gamma-secretase activity and have implications for the development of potential therapeutics for diseases like Alzheimer's disease.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2022)
Article
Chemistry, Multidisciplinary
Xiao Hai, Liqi Fang, Minghui Xiong, Xi Zhou, Shengyao Wang, Hongli Sun, Chenliang Su, Hao Chen
Summary: This study presents an effective strategy for promoting the separation and transport of photoexcited electrons in organic semiconductor photocatalysts by modifying different nitrogen-containing groups on pyrene molecules. The well-designed catalyst Py-m-2N has demonstrated good performance, achieving a high photocatalytic hydrogen evolution rate even without platinum cocatalyst. The nitrogen atom not only serves as an active site for hydrogen production but also plays a pivotal role in efficiently accumulating bulk-phase electrons.
Article
Multidisciplinary Sciences
Tobias Raisch, Andreas Brockmann, Ulrich Ebbinghaus-Kintscher, Jorg Freigang, Oliver Gutbrod, Jan Kubicek, Barbara Maertens, Oliver Hofnagel, Stefan Raunser
Summary: Slowpoke (Slo) potassium channels, which have high conductance and are activated by positive transmembrane potential and high intracellular Ca2+ concentrations, are targets for insecticides and antiparasitic drugs. The study presents cryo-EM structures of Drosophila Slo in Ca2+-bound and Ca2+-free forms, as well as in complex with fungal neurotoxin verruculogen and anthelmintic drug emodepside, revealing potential insect-specific binding pockets and mechanisms of action on Slo channel activity.
NATURE COMMUNICATIONS
(2021)
Article
Cell Biology
Esra Albayrak, Merve Uslu, Sezer Akgol, Emre Can Tuysuz, Fatih Kocabas
Summary: Research suggests that modulation of ubiquitination and neddylation can enhance the function of hematopoietic stem cells (HSCs) by improving their quiescence and self-renewal capacity. Inhibition of ubiquitination and neddylation can increase murine and human stem and progenitor cell compartments, as well as enhance in vitro self-renewal potential. Additionally, inhibition of these processes may trigger bone marrow HSPCs mobilization while decreasing the proliferation of other bone marrow cells. These findings highlight the importance of SKP2, ubiquitination and neddylation in HSC maintenance and expansion.
JOURNAL OF CELLULAR PHYSIOLOGY
(2021)
Article
Neurosciences
Yue Fu, Jianping Jia
Summary: The study demonstrates that ISL can reduce inflammatory cytokines and nitric oxide production in BV2 cells stimulated with AβO, alleviate morphological changes, and suppress inflammation and oxidative stress through Nrf2/NF-κB signaling pathway regulation.
FRONTIERS IN NEUROSCIENCE
(2021)
Article
Biochemistry & Molecular Biology
Yuka Matsushima, Yumi Irie, Yusuke Kageyama, Jean-Pierre Bellier, Ikuo Tooyama, Takahito Maki, Toshiaki Kume, Ryo C. Yanagita, Kazuhiro Irie
Summary: Amyloid beta (A beta) oligomers play a critical role in Alzheimer's disease. The toxic conformation of A beta 42, rather than the oligomeric state, is essential for inducing cytotoxicity. Optimal compounds with potent cytotoxicity as toxic conformer models have been synthesized.
Article
Biochemistry & Molecular Biology
Haishan Jiao, Jianping Jia
Summary: Ginsenoside Compound K exhibits anti-inflammatory and neuroprotective effects in vitro by inhibiting microglia inflammation possibly through the NF-kappa B pathway via LRP1 activation. Further evaluation of Ginsenoside Compound K as a potential effective modulator for Alzheimer's disease is warranted.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
(2022)
Article
Biochemistry & Molecular Biology
Tao He, Anne Gershenson, Stephen J. Eyles, Yan-Jiun Lee, Wenshe R. Liu, Jiangyun Wang, Jianmin Gao, Mary F. Roberts
JOURNAL OF BIOLOGICAL CHEMISTRY
(2015)
Article
Biochemistry & Molecular Biology
Seena S. Koshy, Stephen J. Eyles, Robert M. Weis, Lynmarie K. Thompson
Article
Biochemistry & Molecular Biology
Seena S. Koshy, Xuni Li, Stephen J. Eyles, Robert M. Weis, Lynmarie K. Thompson
Article
Chemistry, Multidisciplinary
Yuan-Han Chen, Lindsay M. Comeaux, Stephen J. Eyles, Michael J. Knapp
CHEMICAL COMMUNICATIONS
(2008)
Editorial Material
Multidisciplinary Sciences
Stephen J. Eyles, Lila M. Gierasch
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2010)
Article
Biochemistry & Molecular Biology
Cristina B. Martin, Vanessa D. Chaplin, Stephen J. Eyles, Michael J. Knapp
Article
Biochemistry & Molecular Biology
Xuni Li, Stephen J. Eyles, Lynmarie K. Thompson
JOURNAL OF BIOLOGICAL CHEMISTRY
(2019)
Article
Multidisciplinary Sciences
Qiaohong Duan, Ming-Che James Liu, Daniel Kita, Samuel S. Jordan, Fang-Ling Jessica Yeh, Robert Yvon, Hunter Carpenter, Anthony N. Federico, Liliana E. Garcia-Valencia, Stephen J. Eyles, Co-Shine Wang, Hen-Ming Wu, Alice Y. Cheung
Article
Chemistry, Inorganic & Nuclear
Daniel Favre, Cedric E. Bobst, Stephen J. Eyles, Heide Murakami, Debbie C. Crans, Igor A. Kaltashov
Summary: This study investigates the structural analysis of V10 species in aqueous solutions. The results show that V10 species undergo partial reduction, and a combination of high-resolution MS measurements and hydrogen/deuterium exchange allows for investigating and interpreting the deviations in isotopic distribution. LC/MS measurements using ion exclusion chromatography provide evidence that the mixed-valence V10 species exist in solution. The study is significant for understanding the redox properties of POMs.
INORGANIC CHEMISTRY FRONTIERS
(2022)
Article
Multidisciplinary Sciences
Thomas Tran, Aruni P. K. K. Karunanayake Mudiyanselage, Stephen J. Eyles, Lynmarie K. Thompson
Summary: Motile bacteria can sense their environment and swim towards favorable conditions using a chemotaxis system. In this system, ligand binding to the chemoreceptor triggers a phosphorylation cascade that controls flagellar rotation. By studying functional signaling complexes in E. coli, it was found that stabilization/destabilization of certain domains in CheA is crucial for modulating its kinase activity in chemotaxis.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2023)
Article
Chemistry, Analytical
Agya K. Frimpong, Rinat R. Abzalimov, Stephen J. Eyles, Igor A. Kaltashov
ANALYTICAL CHEMISTRY
(2007)
Review
Biochemical Research Methods
Igor A. Kaltashov, Mingxuan Zhang, Stephen J. Eyles, Rinat R. Abzalimov
ANALYTICAL AND BIOANALYTICAL CHEMISTRY
(2006)
Article
Biochemistry & Molecular Biology
X Hui, JK Hoerner, SJ Eyles, A Dobo, E Voigtman, AI Mel'Cuk, IA Kaltashov
Article
Immunology
I Matsunaga, A Bhatt, DC Young, YY Cheng, SJ Eyles, GS Besra, V Briken, SA Porcelli, CE Costello, WR Jacobs, DB Moody
JOURNAL OF EXPERIMENTAL MEDICINE
(2004)