Consequences of microbial diversity in forest nitrogen cycling: diverse ammonifiers and specialized ammonia oxidizers

The effects of canopy alteration–induced atmospheric deposition changes on stream chemistry in Japanese cedar forest

(2019) Tomoki Oda et al.   FOREST ECOLOGY AND MANAGEMENT

Losses in microbial functional diversity reduce the rate of key soil processes

(2019) Chanda Trivedi et al.   SOIL BIOLOGY & BIOCHEMISTRY

Latitudinal variation in radial growth phenology of Cryptomeria japonica D. Don trees in Japan

(2018) Tomohiro Nishizono et al.   FORESTRY

Highly abundant acidophilic ammonia-oxidizing archaea causes high rates of nitrification and nitrate leaching in nitrogen-saturated forest soils

(2018) Kazuo Isobe et al.   SOIL BIOLOGY & BIOCHEMISTRY

High soil microbial activity in the winter season enhances nitrogen cycling in a cool-temperate deciduous forest

(2018) Kazuo Isobe et al.   SOIL BIOLOGY & BIOCHEMISTRY

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Another bottleneck for nitrogen mineralization in temperate forest soils: Arginine metabolism in microorganisms

(2018) Kazumichi Fujii et al.   SOIL BIOLOGY & BIOCHEMISTRY

Increasing aridity affects soil archaeal communities by mediating soil niches in semi-arid regions

(2018) Muke Huang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diversity begets diversity in competition for space

(2017) Daniel S. Maynard et al.   Nature Ecology & Evolution

Factors contributing to soil nitrogen mineralization and nitrification rates of forest soils in the Japanese archipelago

(2016) Rieko Urakawa et al.   FOREST ECOLOGY AND MANAGEMENT

Diversity is the question, not the answer

(2016) Ashley Shade   ISME Journal

Microbial regulation of the soil carbon cycle: evidence from gene–enzyme relationships

(2016) Pankaj Trivedi et al.   ISME Journal

Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning

(2016) Manuel Delgado-Baquerizo et al.   JOURNAL OF ECOLOGY

Microbial diversity drives multifunctionality in terrestrial ecosystems

(2016) Manuel Delgado-Baquerizo et al.   Nature Communications

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Higher diversity and abundance of denitrifying microorganisms in environments than considered previously

(2015) Wei Wei et al.   ISME Journal

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

From patterns to causal understanding: Structural equation modeling (SEM) in soil ecology

(2015) Nico Eisenhauer et al.   PEDOBIOLOGIA

Microbiomes in light of traits: A phylogenetic perspective

(2015) J. B. H. Martiny et al.   SCIENCE

Biogeochemical nitrogen properties of forest soils in the Japanese archipelago

(2014) Rieko Urakawa et al.   ECOLOGICAL RESEARCH

Loss of microbial diversity in soils is coincident with reductions in some specialized functions

(2014) Brajesh K. Singh et al.   ENVIRONMENTAL MICROBIOLOGY

Ecological Perspectives on Microbes Involved in N-Cycling

(2014) Kazuo Isobe et al.   MICROBES AND ENVIRONMENTS

Microbial community responses to anthropogenically induced environmental change: towards a systems approach

(2013) Andrew Bissett et al.   ECOLOGY LETTERS

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes

(2013) Amy E Zimmerman et al.   ISME Journal

Loss in microbial diversity affects nitrogen cycling in soil

(2013) Laurent Philippot et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

High abundance of ammonia-oxidizing archaea in acidified subtropical forest soils in southern China after long-term N deposition

(2012) Kazuo Isobe et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Nitrate-use traits of understory plants as potential regulators of vegetation distribution on a slope in a Japanese cedar plantation

(2012) Lina Koyama et al.   PLANT AND SOIL

Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation

(2012) James I. Prosser et al.   TRENDS IN MICROBIOLOGY

Comparison of water availability effect on ammonia-oxidizing bacteria and archaea in microcosms of a Chilean semiarid soil

(2012) Mauricio Bustamante et al.   Frontiers in Microbiology

A consideration of the relative contributions of different microbial subpopulations to the soil N cycle

(2012) Peter J. Bottomley et al.   Frontiers in Microbiology

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

The bacterial biogeography of British soils

(2011) Robert I. Griffiths et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrification and nitrifying microbial communities in forest soils

(2011) Kazuo Isobe et al.   Journal of Forest Research

Niche specialization of terrestrial archaeal ammonia oxidizers

(2011) C. Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Function-specific response to depletion of microbial diversity

(2010) Hannes Peter et al.   ISME Journal

Analytical Techniques for Quantifying 15N/14N of Nitrate, Nitrite, Total Dissolved Nitrogen and Ammonium in Environmental Samples Using a Gas Chromatograph Equipped with a Quadrupole Mass Spectrometer

(2010) Kazuo Isobe et al.   MICROBES AND ENVIRONMENTS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Nitrogen uptake and nitrogen use efficiency above and below ground along a topographic gradient of soil nitrogen availability

(2010) Ryunosuke Tateno et al.   OECOLOGIA

Effect of nitrogen availability on forest understorey cover and its consequences for tree regeneration in the Austrian limestone Alps

(2010) Katharina Diwold et al.   PLANT ECOLOGY

Sustaining multiple ecosystem functions in grassland communities requires higher biodiversity

(2010) E. S. Zavaleta et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The natural abundance of15N in plant and soil-available N indicates a shift of main plant N resources to NO3−from NH4+along the N leaching gradient

(2010) Yu Takebayashi et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mapping field-scale spatial patterns of size and activity of the denitrifier community

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Microbial Engines That Drive Earth's Biogeochemical Cycles

(2008) P. G. Falkowski et al.   SCIENCE

The influence of soil properties on the structure of bacterial and fungal communities across land-use types

(2008) Christian L. Lauber et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial and fungal contributions to soil nitrogen cycling under Douglas fir and red alder at two sites in Oregon

(2007) Stephanie A. Boyle et al.   SOIL BIOLOGY & BIOCHEMISTRY