Phylogenomics Reveals Clear Cases of Misclassification and Genus-Wide Phylogenetic Markers for Acinetobacter

Genome and pan-genome analysis to classify emerging bacteria

(2019) Aurélia Caputo et al.   Biology Direct

Acinetobacter wuhouensis sp. nov., isolated from hospital sewage

(2018) Yiyi Hu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Phylogenomics picks out the par excellence markers for species phylogeny in the genus Staphylococcus

(2018) Lucia Graña-Miraglia et al.   PeerJ

Acinetobacter colistiniresistens sp. nov. (formerly genomic species 13 sensu Bouvet and Jeanjean and genomic species 14 sensu Tjernberg and Ursing), isolated from human infections and characterized by intrinsic resistance to polymyxins

(2017) Alexandr Nemec et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated Pathogen

(2017) Lucía Graña-Miraglia et al.   Frontiers in Microbiology

Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens

(2016) Leighton Pritchard et al.   Analytical Methods

Gene content dissimilarity for subclassification of highly similar microbial strains

(2016) Qichao Tu et al.   BMC GENOMICS

Acinetobacter lactucae sp. nov., isolated from iceberg lettuce (Asteraceae: Lactuca sativa)

(2016) Alejandro P. Rooney et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

PCR Assay Based on the gyr B Gene for Rapid Identification of Acinetobacter baumannii-calcoaceticus Complex at Specie Level

(2016) Aline B. Teixeira et al.   JOURNAL OF CLINICAL LABORATORY ANALYSIS

Reservoirs of Non-baumannii Acinetobacter Species

(2016) Ahmad Al Atrouni et al.   Frontiers in Microbiology

Acinetobacter species as model microorganisms in environmental microbiology: current state and perspectives

(2015) Jaejoon Jung et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Using the taxon-specific genes for the taxonomic classification of bacterial genomes

(2015) Ankit Gupta et al.   BMC GENOMICS

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species

(2015) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

(2014) Marie Touchon et al.   Genome Biology and Evolution

Species Distribution of Clinical Acinetobacter Isolates Revealed by Different Identification Techniques

(2014) Jianfeng Wang et al.   PLoS One

Ordering microbial diversity into ecologically and genetically cohesive units

(2014) B. Jesse Shapiro et al.   TRENDS IN MICROBIOLOGY

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Acinetobacter kookii sp. nov., isolated from soil

(2013) J. Y. Choi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Improvement of MALDI-TOF MS profiling for the differentiation of species within the Acinetobacter calcoaceticus—Acinetobacter baumannii complex

(2013) Ondrej Šedo et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Acinetobacter baumannii: evolution of a global pathogen

(2013) Luísa C.S. Antunes et al.   Pathogens and Disease

Defining bacterial species in the genomic era: insights from the genus Acinetobacter

(2012) Jacqueline Z-M Chan et al.   BMC MICROBIOLOGY

Acinetobacter oleivorans sp. nov. Is capable of adhering to and growing on diesel-oil

(2011) Yoon-Suk Kang et al.   JOURNAL OF MICROBIOLOGY

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Incidence of Acinetobacter Species Other than A. baumannii among Clinical Isolates of Acinetobacter: Evidence for Emerging Species

(2010) J. F. Turton et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Acinetobacter baylyi ADP1 as a model for metabolic system biology

(2009) Véronique de Berardinis et al.   CURRENT OPINION IN MICROBIOLOGY

Gene and genome trees conflict at many levels

(2009) L. S. Haggerty et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity

(2009) C. Fraser et al.   SCIENCE

Proposal to reclassify the Streptomyces albidoflavus clade on the basis of multilocus sequence analysis and DNA–DNA hybridization, and taxonomic elucidation of Streptomyces griseus subsp. solvifaciens

(2009) Xiaoying Rong et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Fast Statistical Alignment

(2009) Robert K. Bradley et al.   PLoS Computational Biology

Factors affecting the concordance between orthologous gene trees and species tree in bacteria

(2008) Santiago Castillo-Ramírez et al.   BMC EVOLUTIONARY BIOLOGY