Phylogenomic Analyses Clarify True Species within the Butterfly Genus Speyeria despite Evidence of a Recent Adaptive Radiation

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Cross-platform compatibility of de novo -aligned SNPs in a nonmodel butterfly genus

(2017) Erin O. Campbell et al.   Molecular Ecology Resources

The true tempo of evolutionary radiation and decline revealed on the Hawaiian archipelago

(2017) Jun Y. Lim et al.   NATURE

Interrelationships and diversification of Argynnis Fabricius and Speyeria Scudder butterflies

(2017) ROBERT S. DE MOYA et al.   SYSTEMATIC ENTOMOLOGY

Speyeria (Lepidoptera: Nymphalidae) Conservation

(2017) Steven Sims   Insects

Genomics clarifies taxonomic boundaries in a difficult species complex

(2017) Jason Baumsteiger et al.   PLoS One

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

Hybridization Studies of Genomic Compatibility and Phenotypic Expression in the Greater Fritillary Butterflies (Nymphalidae: Argynnini)

(2016) Paul C. Hammond et al.   JOURNAL OF THE LEPIDOPTERISTS SOCIETY

RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping

(2015) O. A. Ali et al.   GENETICS

Population ecology of a California endemic: Speyeria adiaste clemencei

(2015) Khuram Zaman et al.   JOURNAL OF INSECT CONSERVATION

Rapid diversification associated with ecological specialization in NeotropicalAdelphabutterflies

(2015) Emily R. Ebel et al.   MOLECULAR ECOLOGY

A tribal level phylogeny of Lake Tanganyika cichlid fishes based on a genomic multi-marker approach

(2015) Britta S. Meyer et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

Multilocus Species Trees Show the Recent Adaptive Radiation of the Mimetic Heliconius Butterflies

(2015) Krzysztof M. Kozak et al.   SYSTEMATIC BIOLOGY

The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews

(2015) Thomas C. Giarla et al.   SYSTEMATIC BIOLOGY

ngsTools: methods for population genetics analyses from next-generation sequencing data

(2014) Matteo Fumagalli et al.   BIOINFORMATICS

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Genome-wide evidence for speciation with gene flow inHeliconiusbutterflies

(2013) Simon H. Martin et al.   GENOME RESEARCH

A molecular phylogenetic analysis of Speyeria and its implications for the management of the threatened Speyeria zerene hippolyta

(2013) Anne McHugh et al.   JOURNAL OF INSECT CONSERVATION

PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data

(2013) J. Graham Ruby et al.   G3-Genes Genomes Genetics

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Phylogenetic Insights on Adaptive Radiation

(2010) Richard E. Glor   Annual Review of Ecology Evolution and Systematics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Toad radiation reveals into-India dispersal as a source of endemism in the Western Ghats-Sri Lanka biodiversity hotspot

(2009) Ines Van Bocxlaer et al.   BMC EVOLUTIONARY BIOLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Polymorphic Butterfly Reveals the Missing Link in Ecological Speciation

(2009) N. L. Chamberlain et al.   SCIENCE