The GATK joint genotyping workflow is appropriate for calling variants in RNA-seq experiments

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(2018) Odile Rogier et al.   BMC GENOMICS

Integrating Sequence-based GWAS and RNA-Seq Provides Novel Insights into the Genetic Basis of Mastitis and Milk Production in Dairy Cattle

(2017) Lingzhao Fang et al.   Scientific Reports

Using RNA-Seq SNP data to reveal potential causal mutations related to pig production traits and RNA editing

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Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology

(2016) Chandra Shekhar Pareek et al.   PLoS One

Scanning and Filling: Ultra-Dense SNP Genotyping Combining Genotyping-By-Sequencing, SNP Array and Whole-Genome Resequencing Data

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(2014) Rasmus Brøndum et al.   BMC GENOMICS

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(2014) Christine F Baes et al.   BMC GENOMICS

Extent of linkage disequilibrium, consistency of gametic phase, and imputation accuracy within and across Canadian dairy breeds

(2014) S.G. Larmer et al.   JOURNAL OF DAIRY SCIENCE

Reliable Identification of Genomic Variants from RNA-Seq Data

(2013) Robert Piskol et al.   AMERICAN JOURNAL OF HUMAN GENETICS

RNA-seq analysis of single bovine blastocysts

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Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data

(2013) Emma M. Quinn et al.   PLoS One

Variant Callers for Next-Generation Sequencing Data: A Comparison Study

(2013) Xiangtao Liu et al.   PLoS One

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(2010) A. McKenna et al.   GENOME RESEARCH

The study of eQTL variations by RNA-seq: from SNPs to phenotypes

(2010) Jacek Majewski et al.   TRENDS IN GENETICS