Influence of 16S rRNA Hypervariable Region on Estimates of Bacterial Diversity and Community Composition in Seawater and Marine Sediment
出版年份 2019 全文链接
标题
Influence of 16S rRNA Hypervariable Region on Estimates of Bacterial Diversity and Community Composition in Seawater and Marine Sediment
作者
关键词
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出版物
Frontiers in Microbiology
Volume 10, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2019-07-16
DOI
10.3389/fmicb.2019.01640
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Microbial Selection and Survival in Subseafloor Sediment
- (2019) John B. Kirkpatrick et al. Frontiers in Microbiology
- Abrupt burial imparts persistent changes to the bacterial diversity of turbidite-associated sediment profiles
- (2018) B. K. Harrison et al. Geobiology
- Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean
- (2018) Renata Medina-Silva et al. JOURNAL OF MARINE SYSTEMS
- Ecology and evolution of seafloor and subseafloor microbial communities
- (2018) William D. Orsi NATURE REVIEWS MICROBIOLOGY
- Microbial community assembly and evolution in subseafloor sediment
- (2017) Piotr Starnawski et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Influence of Igneous Basement on Deep Sediment Microbial Diversity on the Eastern Juan de Fuca Ridge Flank
- (2017) Jessica M. Labonté et al. Frontiers in Microbiology
- Climate oscillations reflected within the microbiome of Arabian Sea sediments
- (2017) William D. Orsi et al. Scientific Reports
- Relationship of Bacterial Richness to Organic Degradation Rate and Sediment Age in Subseafloor Sediment
- (2016) Emily A. Walsh et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Choice of molecular barcode will affect species prevalence but not bacterial community composition
- (2016) Karen Lebret et al. Marine Genomics
- Marine Subsurface Microbial Community Shifts Across a Hydrothermal Gradient in Okinawa Trough Sediments
- (2016) Leah D. Brandt et al. ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL
- Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria
- (2016) Christina Bienhold et al. PLoS One
- Prokaryotic assemblages and metagenomes in pelagic zones of the South China Sea
- (2015) Ching-Hung Tseng et al. BMC GENOMICS
- Variance and potential niche separation of microbial communities in subseafloor sediments off Shimokita Peninsula, Japan
- (2015) Takuro Nunoura et al. ENVIRONMENTAL MICROBIOLOGY
- Metatranscriptomic insights into polyphosphate metabolism in marine sediments
- (2015) Daniel S Jones et al. ISME Journal
- Bacterial diversity and community composition from seasurface to subseafloor
- (2015) Emily A Walsh et al. ISME Journal
- Exploring deep microbial life in coal-bearing sediment down to 2.5 km below the ocean floor
- (2015) F. Inagaki et al. SCIENCE
- Primer and platform effects on 16S rRNA tag sequencing
- (2015) Julien Tremblay et al. Frontiers in Microbiology
- Dynamics of marine bacterial community diversity of the coastal waters of the reefs, inlets, and wastewater outfalls of southeast Florida
- (2015) Alexandra M. Campbell et al. MicrobiologyOpen
- Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula
- (2014) Camila N. Signori et al. Frontiers in Microbiology
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
- (2013) James J. Kozich et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Microbial community analysis of deeply buried marine sediments of the New Jersey shallow shelf (IODP Expedition 313)
- (2013) Anja Breuker et al. FEMS MICROBIOLOGY ECOLOGY
- Gene expression in the deep biosphere
- (2013) William D. Orsi et al. NATURE
- Vertical Profiles of Bacteria in the Tropical and Subarctic Oceans Revealed by Pyrosequencing
- (2013) Hongmei Jing et al. PLoS One
- Evidence for a persistent microbial seed bank throughout the global ocean
- (2013) S. M. Gibbons et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nature and Extent of the Deep Biosphere
- (2013) F. S. Colwell et al. Reviews in Mineralogy & Geochemistry
- Bacterial dominance in subseafloor sediments characterized by methane hydrates
- (2012) Brandon R. Briggs et al. FEMS MICROBIOLOGY ECOLOGY
- Ocean currents shape the microbiome of Arctic marine sediments
- (2012) Leila J Hamdan et al. ISME Journal
- Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
- (2012) J Gregory Caporaso et al. ISME Journal
- Global distribution of microbial abundance and biomass in subseafloor sediment
- (2012) J. Kallmeyer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of Metabolically Active Bacterial Populations in Subseafloor Nankai Trough Sediments above, within, and below the Sulfate–Methane Transition Zone
- (2012) Heath J. Mills et al. Frontiers in Microbiology
- Prospects for the study of evolution in the deep biosphere
- (2012) Jennifer F. Biddle Frontiers in Microbiology
- Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages
- (2012) Alan M. Durbin et al. Frontiers in Microbiology
- Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems
- (2011) Lucie Zinger et al. PLoS One
- High abundance of JS-1- andChloroflexi-relatedBacteriain deeply buried marine sediments revealed by quantitative, real-time PCR
- (2010) Anna Blazejak et al. FEMS MICROBIOLOGY ECOLOGY
- Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
- (2010) Achim Quaiser et al. ISME Journal
- Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing
- (2010) HÉLÈNE AGOGUÉ et al. MOLECULAR ECOLOGY
- Microbial community resemblance methods differ in their ability to detect biologically relevant patterns
- (2010) Justin Kuczynski et al. NATURE METHODS
- Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
- (2010) J. G. Caporaso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys
- (2009) N. Youssef et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean
- (2009) Regina Schauer et al. ISME Journal
- Microbial community structure in the North Pacific ocean
- (2009) Mark V Brown et al. ISME Journal
- Age, spreading rates, and spreading asymmetry of the world's ocean crust
- (2008) R. Dietmar Müller et al. GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers
- (2008) Z. Liu et al. NUCLEIC ACIDS RESEARCH
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