An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis
出版年份 2019 全文链接
标题
An alternative CTCF isoform antagonizes canonical CTCF occupancy and changes chromatin architecture to promote apoptosis
作者
关键词
-
出版物
Nature Communications
Volume 10, Issue 1, Pages -
出版商
Springer Nature
发表日期
2019-04-04
DOI
10.1038/s41467-019-08949-w
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- hichipper: a preprocessing pipeline for calling DNA loops from HiChIP data
- (2018) Caleb A Lareau et al. NATURE METHODS
- Organizational principles of 3D genome architecture
- (2018) M. Jordan Rowley et al. NATURE REVIEWS GENETICS
- Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA
- (2017) Hideharu Hashimoto et al. MOLECULAR CELL
- CTCF-Mediated Enhancer-Promoter Interaction Is a Critical Regulator of Cell-to-Cell Variation of Gene Expression
- (2017) Gang Ren et al. MOLECULAR CELL
- SNP-mediated disruption of CTCF binding at the IFITM3 promoter is associated with risk of severe influenza in humans
- (2017) E Kaitlynn Allen et al. NATURE MEDICINE
- Alternative splicing as a regulator of development and tissue identity
- (2017) Francisco E. Baralle et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Identification of critical base pairs required for CTCF binding in motif M1 and M2
- (2017) Wufeng Li et al. Protein & Cell
- Cell-Type-Specific Alternative Splicing Governs Cell Fate in the Developing Cerebral Cortex
- (2016) Xiaochang Zhang et al. CELL
- Insulated Neighborhoods: Structural and Functional Units of Mammalian Gene Control
- (2016) Denes Hnisz et al. CELL
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq
- (2016) Rongxin Fang et al. CELL RESEARCH
- CTCF: making the right connections
- (2016) Rodolfo Ghirlando et al. GENES & DEVELOPMENT
- HiChIP: efficient and sensitive analysis of protein-directed genome architecture
- (2016) Maxwell R Mumbach et al. NATURE METHODS
- Organization and function of the 3D genome
- (2016) Boyan Bonev et al. NATURE REVIEWS GENETICS
- ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis
- (2016) Guipeng Li et al. NUCLEIC ACIDS RESEARCH
- The LIM protein AJUBA promotes colorectal cancer cell survival through suppression of JAK1/STAT1/IFIT2 network
- (2016) H Jia et al. ONCOGENE
- A splicing isoform of TEAD4 attenuates the Hippo–YAP signalling to inhibit tumour proliferation
- (2016) Yangfan Qi et al. Nature Communications
- Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
- (2016) Neva C. Durand et al. Cell Systems
- Mango: a bias-correcting ChIA-PET analysis pipeline
- (2015) Douglas H. Phanstiel et al. BIOINFORMATICS
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
- (2015) Ya Guo et al. CELL
- Insulator dysfunction and oncogene activation in IDH mutant gliomas
- (2015) William A. Flavahan et al. NATURE
- Three-dimensional genome architecture: players and mechanisms
- (2015) Ana Pombo et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- CTCF establishes discrete functional chromatin domains at theHoxclusters during differentiation
- (2015) Varun Narendra et al. SCIENCE
- Dynamically reorganized chromatin is the key for the reprogramming of somatic cells to pluripotent cells
- (2015) Kaimeng Huang et al. Scientific Reports
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- CTCF: an architectural protein bridging genome topology and function
- (2014) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- deepTools: a flexible platform for exploring deep-sequencing data
- (2014) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- CTCF and Cohesin: Linking Gene Regulatory Elements with Their Targets
- (2013) Matthias Merkenschlager et al. CELL
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment
- (2013) Jennifer E. Phillips-Cremins et al. CELL
- Ribosomal RNA Gene Transcription Mediated by the Master Genome Regulator Protein CCCTC-binding Factor (CTCF) Is Negatively Regulated by the Condensin Complex
- (2013) Kaimeng Huang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- GC-Content Normalization for RNA-Seq Data
- (2011) Davide Risso et al. BMC BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming
- (2011) Mathieu Gabut et al. CELL
- Proteomic Studies of Syk-Interacting Proteins Using a Novel Amine-Specific Isotope Tag and GFP Nanotrap
- (2011) Jacob A. Galan et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- CTCF-binding elements mediate control of V(D)J recombination
- (2011) Chunguang Guo et al. NATURE
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Interferon Stimulated Gene 54 Promotes Apoptosis
- (2010) Marcin Stawowczyk et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Gene ontology analysis for RNA-seq: accounting for selection bias
- (2010) Matthew D Young et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- CTCF: Master Weaver of the Genome
- (2009) Jennifer E. Phillips et al. CELL
- Use of in vivo biotinylation to study protein–protein and protein–DNA interactions in mouse embryonic stem cells
- (2009) Jonghwan Kim et al. Nature Protocols
- Cohesins Functionally Associate with CTCF on Mammalian Chromosome Arms
- (2008) Vania Parelho et al. CELL
- Alternative isoform regulation in human tissue transcriptomes
- (2008) Eric T. Wang et al. NATURE
- Cohesin mediates transcriptional insulation by CCCTC-binding factor
- (2008) Kerstin S. Wendt et al. NATURE
- Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
- (2008) Qun Pan et al. NATURE GENETICS
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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