Optical DNA Mapping Combined with Cas9-Targeted Resistance Gene Identification for Rapid Tracking of Resistance Plasmids in a Neonatal Intensive Care Unit Outbreak

Neonatal intestinal colonization with extended-spectrum β-lactamase–producing Enterobacteriaceae— a 5-year follow-up study

(2018) V. Nordberg et al.   CLINICAL MICROBIOLOGY AND INFECTION

Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach

(2018) Albertas Dvirnas et al.   PLoS One

Interspecies plasmid transfer appears rare in sequential infections with extended-spectrum β-lactamase (ESBL)-producing Enterobacteriaceae

(2018) Anna Lindblom et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Genetic variation in the conjugative plasmidome of a hospital effluent multidrug resistant Escherichia coli strain

(2018) Catarina Ferreira et al.   CHEMOSPHERE

Optical DNA mapping in nanofluidic devices: principles and applications

(2017) Vilhelm Müller et al.   LAB ON A CHIP

Access to effective antimicrobials: a worldwide challenge

(2016) Ramanan Laxminarayan et al.   LANCET

Rapid identification of intact bacterial resistance plasmids via optical mapping of single DNA molecules

(2016) Lena K. Nyberg et al.   Scientific Reports

Rapid Tracing of Resistance Plasmids in a Nosocomial Outbreak Using Optical DNA Mapping

(2016) Vilhelm Müller et al.   ACS Infectious Diseases

Direct identification of antibiotic resistance genes on single plasmid molecules using CRISPR/Cas9 in combination with optical DNA mapping

(2016) Vilhelm Müller et al.   Scientific Reports

Bacteriological profile and clinical predictors of ESBL neonatal sepsis

(2015) Deepak Sharma et al.   Journal of Maternal-Fetal & Neonatal Medicine

Fast size-determination of intact bacterial plasmids using nanofluidic channels

(2015) K. Frykholm et al.   LAB ON A CHIP

Nanoconfined Circular and Linear DNA: Equilibrium Conformations and Unfolding Kinetics

(2015) Mohammadreza Alizadehheidari et al.   MACROMOLECULES

What caused the outbreak of ESBL-producing Klebsiella pneumoniae in a neonatal intensive care unit, Germany 2009 to 2012? Reconstructing transmission with epidemiological analysis and whole-genome sequencing

(2015) S. Haller et al.   BMJ Open

Characterization of ESBL disseminating plasmids

(2015) Alma Brolund et al.   Infectious Diseases

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli

(2014) K. G. Joensen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Competitive binding-based optical DNA mapping for fast identification of bacteria - multi-ligand transfer matrix theory and experimental applications on Escherichia coli

(2014) Adam N. Nilsson et al.   NUCLEIC ACIDS RESEARCH

Beyond sequencing: optical mapping of DNA in the age of nanotechnology and nanoscopy

(2013) Michal Levy-Sakin et al.   CURRENT OPINION IN BIOTECHNOLOGY

Heterogeneous staining: a tool for studies of how fluorescent dyes affect the physical properties of DNA

(2013) Lena Nyberg et al.   NUCLEIC ACIDS RESEARCH

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

A single-step competitive binding assay for mapping of single DNA molecules

(2011) Lena K. Nyberg et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

DNA in nanochannels—directly visualizing genomic information

(2010) Fredrik Persson et al.   CHEMICAL SOCIETY REVIEWS