4.4 Article

CalAtom: A software for quantitatively analysing atomic columns in a transmission electron microscope image

期刊

ULTRAMICROSCOPY
卷 202, 期 -, 页码 114-120

出版社

ELSEVIER
DOI: 10.1016/j.ultramic.2019.04.007

关键词

STEM/TEM; CalAtom Software; Position of atomic column; Elementary composition

资金

  1. National Science Foundation of China [61571197, 51772265, 51761165024, 61721005]
  2. National Basic Research Program of China [2015CB921004]
  3. Zhejiang Provincial Natural Science Foundation [D19E020002]
  4. 111 project [B16042]
  5. National Key R&D Program of China [2017YFA0303600]

向作者/读者索取更多资源

We developed a software tool named CalAtom in MATLAB (TM) for quantitative analyses of atomic columns in (scanning) transmission electron microscopy, (S)TEM, images. This software provides three algorithms to determine the position of an atomic column with high precision: the moment method, the model-based method and the multiple-ellipse fitting method. Based on the measured positions, the software offers several options for further analyses, such as in-plane scale local environments of the atomic columns, local elementary composition and real-space averaging of image motifs. As an example, we use the CalAtom software to determine atomic positions and local elemental composition of the MoS2(1-x)Se2x alloy monolayers.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.4
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

暂无数据
Article Microscopy

On central focusing for contrast optimization in direct electron ptychography of thick samples

C. Gao, C. Hofer, T. J. Pennycook

Summary: Ptychography provides high dose efficiency images that can reveal light elements next to heavy atoms. However, contrast reversals can occur when the projected potential becomes strong. Recent research has shown that these reversals can be counteracted by adapting the focus. This study explains why the best contrast is often found with the probe focused to the middle of the sample and highlights the importance of convergence angle in thin samples to remove contrast reversals.

ULTRAMICROSCOPY (2024)

Article Microscopy

Reconstruction of Angstrom resolution exit-waves by the application of drift-corrected phase-shifting off-axis electron holography

J. Lindner, U. Ross, T. Meyer, V. Boureau, M. Seibt, Ch. Jooss

Summary: Phase-shifting electron holography is an excellent method with high phase sensitivity to reveal electron wave phase information. An advanced drift correction scheme is proposed in this study, which exploits the interface of the TEM specimen and the vacuum area in the hologram. This method allows for obtaining reliable phase information.

ULTRAMICROSCOPY (2024)

Article Microscopy

Prediction of primary knock-on damage during electron microscopy characterization of lithium-containing materials

Ali Jaberi, Nicolas Brodusch, Jun Song, Raynald Gauvin

Summary: This study investigates knock-on damage in lithium-ion batteries (LIBs) by computing threshold displacement energies (TDEs) and performing Monte Carlo simulation. The results indicate that Li is most sensitive to knock-on damage at moderate electron energies, and TDE is the principal parameter for assessing Li sensitivity to knock-on damage across similar structures.

ULTRAMICROSCOPY (2024)

Article Microscopy

Improving the temporal resolution of event-based electron detectors using neural network cluster analysis

Alexander Schroeder, Christopher Rathje, Leon van Velzen, Maurits Kelder, Sascha Schaefer

Summary: This study utilizes novel event-based electron detector platforms to extend the temporal resolution of electron microscopy. By training a neural network to predict electron arrival time, the researchers were able to improve the timing accuracy and achieve a promising solution for enhancing electron timing precision in various electron microscopy applications.

ULTRAMICROSCOPY (2024)

Article Microscopy

Mean inner potential of elemental crystals from density-functional theory calculations: Efficient computation and trends

Avi Auslender, Nivedita Pandey, Amit Kohn, Oswaldo Dieguez

Summary: This article describes a faster implementation based on DFT for computing the mean inner potential of crystals, providing quantum-mechanical calculations beyond the independent-atom approximation. The study also reveals the dependence of the mean inner potential on sample boundary conditions, mass density, and magnetic susceptibility, highlighting its correlation with various material properties.

ULTRAMICROSCOPY (2024)

Article Microscopy

Self-supervised noise modeling and sparsity guided electron tomography volumetric image denoising

Zhidong Yang, Dawei Zang, Hongjia Li, Zhao Zhang, Fa Zhang, Renmin Han

Summary: In this work, we propose a self-supervised deep learning model for cryo-ET volumetric image denoising based on noise modeling and sparsity guidance. Experimental results demonstrate that our method can achieve reliable denoising by training on single noisy volume and outperform existing methods.

ULTRAMICROSCOPY (2024)

Article Microscopy

Real-time electron clustering in an event-driven hybrid pixel detector

J. Kuttruff, J. Holder, Y. Meng, P. Baum

Summary: In this study, a robust clustering algorithm is proposed that can find clusters in a continuous stream of raw data in real time. This algorithm converts pixel hits measured by hybrid pixel detectors to real single-electron events. By continuously comparing with previous hits, the algorithm efficiently identifies the merging of new and old events.

ULTRAMICROSCOPY (2024)

Article Microscopy

Atom counting from a combination of two ADF STEM images

D. G. Senturk, C. P. Yu, A. De Backer, S. Van Aert

Summary: This article presents a statistics-based method for accurately counting the number of atoms in nanostructures, especially for images acquired with low electron doses and multiple element structures.

ULTRAMICROSCOPY (2024)

Article Microscopy

Spectromicroscopic study of the transformation with low energy ions of a hematite thin film into a magnetite/hematite epitaxial bilayer

Mauricio J. Prieto, Lucas de Souza Caldas, Liviu C. Tanase, Thomas Schmidt, Oscar Rodriguez de la Fuente

Summary: This study presents a synchrotron-based investigation of the synthesis process of a magnetite/hematite bilayer. Ion bombardment gradually transforms hematite into magnetite, and the growth of magnetite leads to the formation of stable boundaries. These findings are significant for understanding novel oxide heterostructures.

ULTRAMICROSCOPY (2024)

Article Microscopy

Dose symmetric electron diffraction tomography (DS-EDT): Implementation of a dose-symmetric tomography scheme in 3D electron diffraction

Emre Yoruk, Holger Klein, Stephanie Kodjikian

Summary: Beam sensitive nanomaterials pose challenges for crystallographic structure determination. A dose symmetric electron diffraction tomography (DS-EDT) method is developed to reduce beam damage and obtain complete data sets by merging individual datasets from multiple crystals.

ULTRAMICROSCOPY (2024)

Article Microscopy

Relation between sampling, sensitivity and precision in strain mapping using the Geometric Phase Analysis method in Scanning Transmission Electron Microscopy

A. Pofelski, Y. Zhu, G. A. Botton

Summary: The precision and sensitivity of the GPA method for strain characterization is a widely discussed topic. This study introduces the concept of phase noise and analyzes the parameter of sampling to improve the precision of GPA. Experimental and theoretical results demonstrate that using a larger pixel spacing in STEM can enhance the precision and sensitivity of the GPA method.

ULTRAMICROSCOPY (2024)

Article Microscopy

Importance of TEM sample thickness for measuring strain fields

Sangjun Kang, Di Wang, Christian Kuebel, Xiaoke Mu

Summary: Transmission electron microscopy is a valuable tool for assessing strain fields within materials. However, using thin specimens in TEM analysis can affect atomic configuration and deformation structure.

ULTRAMICROSCOPY (2024)