Phylogenomics of Auchenorrhyncha (Insecta: Hemiptera) using transcriptomes: examining controversial relationships via degeneracy coding and interrogation of gene conflict
出版年份 2019 全文链接
标题
Phylogenomics of Auchenorrhyncha (Insecta: Hemiptera) using transcriptomes: examining controversial relationships via degeneracy coding and interrogation of gene conflict
作者
关键词
-
出版物
SYSTEMATIC ENTOMOLOGY
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2019-07-31
DOI
10.1111/syen.12381
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Recombination rate variation shapes barriers to introgression across butterfly genomes
- (2019) Simon H. Martin et al. PLOS BIOLOGY
- DAMBE7: New and Improved Tools for Data Analysis in Molecular Biology and Evolution
- (2018) Xuhua Xia MOLECULAR BIOLOGY AND EVOLUTION
- Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion
- (2018) Nicolas Galtier et al. MOLECULAR BIOLOGY AND EVOLUTION
- New World spittlebugs (Hemiptera: Cercopidae: Ischnorhininae): Dated molecular phylogeny, classification, and evolution of aposematic coloration
- (2018) Andressa Paladini et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- GC content elevates mutation and recombination rates in the yeastSaccharomyces cerevisiae
- (2018) Denis A. Kiktev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification
- (2018) DAVID C. MARSHALL et al. ZOOTAXA
- Long-branch attraction in species tree estimation: inconsistency of partitioned likelihood and topology-based summary methods
- (2018) Sebastien Roch et al. SYSTEMATIC BIOLOGY
- Phylogenomics and the evolution of hemipteroid insects
- (2018) Kevin P. Johnson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The impact of GC bias on phylogenetic accuracy using targeted enrichment phylogenomic data
- (2017) Silas Bossert et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Mitochondrial phylogenomics of Hemiptera reveals adaptive innovations driving the diversification of true bugs
- (2017) Hu Li et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Relative benefits of amino-acid, codon, degeneracy, DNA, and purine-pyrimidine character coding for phylogenetic analyses of exons
- (2017) Mark P. Simmons Journal of Systematics and Evolution
- Analytical Biases Associated with GC-Content in Molecular Evolution
- (2017) Jonathan Romiguier et al. Frontiers in Genetics
- Deep-level phylogeny of Cicadomorpha inferred from mitochondrial genomes sequenced by NGS
- (2017) Nan Song et al. Scientific Reports
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
- (2016) Erfan Sayyari et al. MOLECULAR BIOLOGY AND EVOLUTION
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Complex within a Complex: Integrative Taxonomy Reveals Hidden Diversity in Cicadetta brevipennis (Hemiptera: Cicadidae) and Unexpected Relationships with a Song Divergent Relative
- (2016) Thomas Hertach et al. PLoS One
- A phylogeny of the treehopper subfamily Heteronotinae reveals convergent pronotal traits (Hemiptera: Auchenorrhyncha: Membracidae)
- (2016) OLIVIA EVANGELISTA et al. SYSTEMATIC ENTOMOLOGY
- GC-biased gene conversion links the recombination landscape and demography to genomic base composition
- (2015) Carina F. Mugal et al. BIOESSAYS
- ExaML version 3: a tool for phylogenomic analyses on supercomputers
- (2015) Alexey M. Kozlov et al. BIOINFORMATICS
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- SUMAC: Constructing Phylogenetic Supermatrices and Assessing Partially Decisive Taxon Coverage
- (2015) William A. Freyman Evolutionary Bioinformatics
- PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences
- (2015) Siavash Mirarab et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Phylogenomics Controlling for Base Compositional Bias Reveals a Single Origin of Eusociality in Corbiculate Bees
- (2015) Jonathan Romiguier et al. MOLECULAR BIOLOGY AND EVOLUTION
- A new tribe and species of Clastopterinae (Hemiptera: Cercopoidea: Clastopteridae) from Africa, Asia and North America
- (2015) K.G. ANDREW HAMILTON ZOOTAXA
- Phylogenetic relationships of Hemiptera inferred from mitochondrial and nuclear genes
- (2015) Nan Song et al. Mitochondrial DNA Part A
- New Jurassic Cercopoidea from China and their evolutionary significance (Insecta: Hemiptera)
- (2015) BO WANG et al. PALAEONTOLOGY
- SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
- (2014) Y. Xie et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Selecting optimal partitioning schemes for phylogenomic datasets
- (2014) Robert Lanfear et al. BMC EVOLUTIONARY BIOLOGY
- Biased Gene Conversion and GC-Content Evolution in the Coding Sequences of Reptiles and Vertebrates
- (2014) Emeric Figuet et al. Genome Biology and Evolution
- Phylogenomics resolves the timing and pattern of insect evolution
- (2014) B. Misof et al. SCIENCE
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- The phylogeny and revised classification of Machaerotidae, the tube-making spittlebugs (Hemiptera: Auchenorrhyncha: Cercopoidea)
- (2014) ADAM J. BELL et al. SYSTEMATIC ENTOMOLOGY
- Factors influencing egg parasitism in sub-social insects: insights from the treehopperAlchisme grossa(Hemiptera, Auchenorrhyncha, Membracidae)
- (2013) LUIS CAMACHO et al. ECOLOGICAL ENTOMOLOGY
- Diversity of bacterial endosymbionts and bacteria-host co-evolution in Gondwanan relict moss bugs (Hemiptera: Coleorrhyncha: Peloridiidae)
- (2013) Stefan Martin Kuechler et al. ENVIRONMENTAL MICROBIOLOGY
- Phylotranscriptomics: Saturated Third Codon Positions Radically Influence the Estimation of Trees Based on Next-Gen Data
- (2013) Jesse W. Breinholt et al. Genome Biology and Evolution
- Population Genomic Analysis Reveals No Evidence for GC-Biased Gene Conversion in Drosophila melanogaster
- (2013) Matthew C. Robinson et al. MOLECULAR BIOLOGY AND EVOLUTION
- Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
- (2013) Jonathan Romiguier et al. MOLECULAR BIOLOGY AND EVOLUTION
- The earliest known holometabolous insects
- (2013) André Nel et al. NATURE
- A Preliminary Molecular Phylogeny of Planthoppers (Hemiptera: Fulgoroidea) Based on Nuclear and Mitochondrial DNA Sequences
- (2013) Nan Song et al. PLoS One
- Phylogenetic relationships among superfamilies of Cicadomorpha (Hemiptera: Auchenorrhyncha) inferred from the wing base structure
- (2012) Kazunori YOSHIZAWA et al. ENTOMOLOGICAL SCIENCE
- Evidence for Widespread GC-biased Gene Conversion in Eukaryotes
- (2012) Eugénie Pessia et al. Genome Biology and Evolution
- A Molecular Phylogeny of Hemiptera Inferred from Mitochondrial Genome Sequences
- (2012) Nan Song et al. PLoS One
- Recombination is associated with the evolution of genome structure and worker behavior in honey bees
- (2012) C. F. Kent et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Many Landscapes of Recombination in Drosophila melanogaster
- (2012) Josep M. Comeron et al. PLoS Genetics
- An Extraordinary Early Jurassic Planthopper from Hunan (China) Representing a New Family Qiyangiricaniidae fam. nov. (Hemiptera: Fulgoromorpha: Fulgoroidea)
- (2011) Jacek SZWEDO et al. ACTA GEOLOGICA SINICA-ENGLISH EDITION
- Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
- (2011) A. Hobolth et al. GENOME RESEARCH
- Resurrecting the ghost of green revolutions past: The brown planthopper as a recurring threat to high-yielding rice production in tropical Asia
- (2011) Dale G. Bottrell et al. JOURNAL OF ASIA-PACIFIC ENTOMOLOGY
- Spittlebug impacts on sugarcane quality and ethanol production
- (2011) Gisele Cristina Ravaneli et al. PESQUISA AGROPECUARIA BRASILEIRA
- Hybridization, Mitochondrial DNA Phylogeography, and Prediction of the Early Stages of Reproductive Isolation: Lessons from New Zealand Cicadas (Genus Kikihia)
- (2011) David C. Marshall et al. SYSTEMATIC BIOLOGY
- Higher-level phylogeny of the insect order Hemiptera: is Auchenorrhyncha really paraphyletic?
- (2011) JASON R. CRYAN et al. SYSTEMATIC ENTOMOLOGY
- Systematics and Evolution of Heteroptera: 25 Years of Progress
- (2010) Christiane Weirauch et al. Annual Review of Entomology
- The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell
- (2010) T. Junier et al. BIOINFORMATICS
- Phylogenomics with incomplete taxon coverage: the limits to inference
- (2010) Michael J Sanderson et al. BMC EVOLUTIONARY BIOLOGY
- SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
- (2010) Gaurav Vaidya et al. CLADISTICS
- Taxonomy and phylogeny of the Gondwanan moss bugs or Peloridiidae (Hemiptera, Coleorrhyncha)
- (2010) Daniel Burckhardt DEUTSCHE ENTOMOLOGISCHE ZEITSCHRIFT
- Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
- (2010) J. Romiguier et al. GENOME RESEARCH
- The phylogeny of hexapod “orders”. A critical review of recent accounts
- (2010) N. P. Kristensen JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH
- Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences
- (2010) Jerome C. Regier et al. NATURE
- Family-level relationships of the spittlebugs and froghoppers (Hemiptera: Cicadomorpha: Cercopoidea)
- (2010) JASON R. CRYAN et al. SYSTEMATIC ENTOMOLOGY
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Gene tree discordance, phylogenetic inference and the multispecies coalescent
- (2009) James H. Degnan et al. TRENDS IN ECOLOGY & EVOLUTION
- The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree
- (2008) Jeffrey P. Townsend et al. JOURNAL OF MOLECULAR EVOLUTION
- 18S rRNA hyper-elongation and the phylogeny of Euhemiptera (Insecta: Hemiptera)
- (2008) Qiang Xie et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Entomologically famous, evolutionarily unexplored: The first phylogeny of the lanternfly family Fulgoridae (Insecta: Hemiptera: Fulgoroidea)
- (2008) Julie M. Urban et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- High-Resolution Mapping of Crossovers Reveals Extensive Variation in Fine-Scale Recombination Patterns Among Humans
- (2008) G. Coop et al. SCIENCE
- Allochronic speciation, secondary contact, and reproductive character displacement in periodical cicadas (Hemiptera: Magicicada spp.): genetic, morphological, and behavioural evidence
- (2003) John R. Cooley et al. MOLECULAR ECOLOGY
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