Spatiotemporal structure of cell fate decisions in murine neural crest

Schwann Cell Precursors Generate the Majority of Chromaffin Cells in Zuckerkandl Organ and Some Sympathetic Neurons in Paraganglia

(2019) Maria Eleni Kastriti et al.   Frontiers in Molecular Neuroscience

Single-Cell Transcriptomics Meets Lineage Tracing

(2018) Lennart Kester et al.   Cell Stem Cell

Migration and diversification of the vagal neural crest

(2018) Erica J. Hutchins et al.   DEVELOPMENTAL BIOLOGY

Fundamental limits on dynamic inference from single-cell snapshots

(2018) Caleb Weinreb et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

(2018) Jeffrey A. Farrell et al.   SCIENCE

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution

(2018) James A. Briggs et al.   SCIENCE

RNA velocity of single cells

(2018) Gioele La Manno et al.   NATURE

Principal Graph and Structure Learning Based on Reversed Graph Embedding

(2017) Qi Mao et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Neuroblastoma is composed of two super-enhancer-associated differentiation states

(2017) Tim van Groningen et al.   NATURE GENETICS

Heterogeneity of neuroblastoma cell identity defined by transcriptional circuitries

(2017) Valentina Boeva et al.   NATURE GENETICS

chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data

(2017) Alicia N Schep et al.   NATURE METHODS

Single-cell mRNA quantification and differential analysis with Census

(2017) Xiaojie Qiu et al.   NATURE METHODS

Reversed graph embedding resolves complex single-cell trajectories

(2017) Xiaojie Qiu et al.   NATURE METHODS

Dual origin of enteric neurons in vagal Schwann cell precursors and the sympathetic neural crest

(2017) Isabel Espinosa-Medina et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multipotent peripheral glial cells generate neuroendocrine cells of the adrenal medulla

(2017) Alessandro Furlan et al.   SCIENCE

Gene bivalency at Polycomb domains regulates cranial neural crest positional identity

(2017) Maryline Minoux et al.   SCIENCE

Dynamics of lineage commitment revealed by single-cell transcriptomics of differentiating embryonic stem cells

(2017) Stefan Semrau et al.   Nature Communications

Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis

(2016) Jean Fan et al.   NATURE METHODS

Reprogramming of avian neural crest axial identity and cell fate

(2016) M. Simoes-Costa et al.   SCIENCE

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

(2016) I. Tirosh et al.   SCIENCE

Premigratory and Migratory Neural Crest Cells Are Multipotent In Vivo

(2015) Arianna Baggiolini et al.   Cell Stem Cell

Establishing neural crest identity: a gene regulatory recipe

(2015) M. Simoes-Costa et al.   DEVELOPMENT

Defining cell types and states with single-cell genomics

(2015) Cole Trapnell   GENOME RESEARCH

JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles

(2015) Anthony Mathelier et al.   NUCLEIC ACIDS RESEARCH

Stochastic NANOG fluctuations allow mouse embryonic stem cells to explore pluripotency

(2014) Elsa Abranches et al.   DEVELOPMENT

Full-length RNA-seq from single cells using Smart-seq2

(2014) Simone Picelli et al.   Nature Protocols

The widely used Wnt1-Cre transgene causes developmental phenotypes by ectopic activation of Wnt signaling

(2013) Ace E. Lewis et al.   DEVELOPMENTAL BIOLOGY

In situ sequencing for RNA analysis in preserved tissue and cells

(2013) Rongqin Ke et al.   NATURE METHODS

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

(2013) Simone Picelli et al.   NATURE METHODS

Oscillatory Control of Factors Determining Multipotency and Fate in Mouse Neural Progenitors

(2013) I. Imayoshi et al.   SCIENCE

Twist1 Controls a Cell-Specification Switch Governing Cell Fate Decisions within the Cardiac Neural Crest

(2013) Joshua W. Vincentz et al.   PLoS Genetics

Current perspectives of the signaling pathways directing neural crest induction

(2012) Timothy J. Stuhlmiller et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Neurogenin 2 regulates progenitor cell-cycle progression and Purkinje cell dendritogenesis in cerebellar development

(2012) M. Florio et al.   DEVELOPMENT

Identification of a rudimentary neural crest in a non-vertebrate chordate

(2012) Philip Barron Abitua et al.   NATURE

Inferring rules of lineage commitment in haematopoiesis

(2012) Cristina Pina et al.   NATURE CELL BIOLOGY

Anticipating Critical Transitions

(2012) M. Scheffer et al.   SCIENCE

Pluripotency Factors in Embryonic Stem Cells Regulate Differentiation into Germ Layers

(2011) Matt Thomson et al.   CELL

The stem cells of the neural crest

(2011) Nicole M. Le Douarin et al.   CELL CYCLE

Neural crest stem cell multipotency requires Foxd3 to maintain neural potential and repress mesenchymal fates

(2011) N. A. Mundell et al.   DEVELOPMENT

RNAscope

(2011) Fay Wang et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Homeoprotein Phox2b commands a somatic-to-visceral switch in cranial sensory pathways

(2011) F. D'Autreaux et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

(2011) Graciana Diez-Roux et al.   PLOS BIOLOGY

Cranial neural crest cells on the move: Their roles in craniofacial development

(2010) Dwight R. Cordero et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART A

Insm1 (IA-1) is an essential component of the regulatory network that specifies monoaminergic neuronal phenotypes in the vertebrate hindbrain

(2009) J. Jacob et al.   DEVELOPMENT

Requirement for Twist1 in frontonasal and skull vault development in the mouse embryo

(2009) Heidi Bildsoe et al.   DEVELOPMENTAL BIOLOGY

Detection of nonneutral substitution rates on mammalian phylogenies

(2009) K. S. Pollard et al.   GENOME RESEARCH

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line

(2009) Harukazu Suzuki et al.   NATURE GENETICS

Signaling pathways regulating the expression ofPrx1andPrx2in the chick mandibular mesenchyme

(2008) Aikaterini-El Doufexi et al.   DEVELOPMENTAL DYNAMICS