Single-cell genomics unveiled a cryptic cyanobacterial lineage with a worldwide distribution hidden by a dinoflagellate host

A global ocean atlas of eukaryotic genes

(2018) Quentin Carradec et al.   Nature Communications

Dinophysiales (Dinophyceae) of the National Park Sistema Arrecifal Veracruzano, Gulf of Mexico, with a key for indentification

(2017) Yuri B. Okolodkov   Acta Botanica Mexicana

Genomic divergence within non-photosynthetic cyanobacterial endosymbionts in rhopalodiacean diatoms

(2017) Takuro Nakayama et al.   Scientific Reports

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

(2016) Gregory K. Farrant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

(2016) Francisco M. Cornejo-Castillo et al.   Nature Communications

Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution

(2016) Beatriz Díez et al.   PLoS One

hybridSPAdes: an algorithm for hybrid assembly of short and long reads

(2015) Dmitry Antipov et al.   BIOINFORMATICS

eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences

(2015) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

Open science resources for the discovery and analysis of Tara Oceans data

(2015) Stéphane Pesant et al.   Scientific Data

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marineSynechococcus

(2014) Florian Humily et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria

(2014) Deniz Bombar et al.   ISME Journal

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

Complete genome of a nonphotosynthetic cyanobacterium in a diatom reveals recent adaptations to an intracellular lifestyle

(2014) T. Nakayama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

(2013) Sergey Nurk et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Discovery of an Endosymbiotic Nitrogen-Fixing Cyanobacterium UCYN-A in Braarudosphaera bigelowii (Prymnesiophyceae)

(2013) Kyoko Hagino et al.   PLoS One

Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus

(2013) P. Flombaum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic deletions disrupt nitrogen metabolism pathways of a cyanobacterial diatom symbiont

(2013) Jason A. Hilton et al.   Nature Communications

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Unicellular Cyanobacterium Symbiotic with a Single-Celled Eukaryotic Alga

(2012) A. W. Thompson et al.   SCIENCE

Diversity and Distribution of Marine Synechococcus: Multiple Gene Phylogenies for Consensus Classification and Development of qPCR Assays for Sensitive Measurement of Clades in the Ocean

(2012) Nathan A. Ahlgren et al.   Frontiers in Microbiology

Loss of genes for DNA recombination and repair in the reductive genome evolution of thioautotrophic symbionts of Calyptogena clams

(2011) Hirokazu Kuwahara et al.   BMC EVOLUTIONARY BIOLOGY

Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus

(2011) Sophie Mazard et al.   ENVIRONMENTAL MICROBIOLOGY

Novel lineages of Prochlorococcus and Synechococcus in the global oceans

(2011) Sijun Huang et al.   ISME Journal

A Genomic Reappraisal of Symbiotic Function in the Aphid/Buchnera Symbiosis: Reduced Transporter Sets and Variable Membrane Organisations

(2011) Hubert Charles et al.   PLoS One

Putative N2-fixing heterotrophic bacteria associated with dinoflagellate–Cyanobacteria consortia in the low-nitrogen Indian Ocean

(2010) H Farnelid et al.   AQUATIC MICROBIAL ECOLOGY

Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium

(2010) H. James Tripp et al.   NATURE

Prochlorococcus: Advantages and Limits of Minimalism

(2009) Frédéric Partensky et al.   Annual Review of Marine Science

Spatial distribution of symbiont-bearing dinoflagellates in the Indian Ocean in relation to oceanographic regimes

(2009) W Tarangkoon et al.   AQUATIC MICROBIAL ECOLOGY

Global distribution of cyanobacterial ecotypes in the cold biosphere

(2009) Anne D Jungblut et al.   ISME Journal

Ecological Genomics of Marine Picocyanobacteria

(2009) D. J. Scanlan et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

For absent friends: life without recombination in mutualistic γ-proteobacteria

(2009) Gary J. Sharples   TRENDS IN MICROBIOLOGY

Chromatophore Genome Sequence of Paulinella Sheds Light on Acquisition of Photosynthesis by Eukaryotes

(2008) Eva C.M. Nowack et al.   CURRENT BIOLOGY

Globally Distributed Uncultivated Oceanic N2-Fixing Cyanobacteria Lack Oxygenic Photosystem II

(2008) J. P. Zehr et al.   SCIENCE