标题
HMMRATAC: a Hidden Markov ModeleR for ATAC-seq
作者
关键词
-
出版物
NUCLEIC ACIDS RESEARCH
Volume -, Issue -, Pages -
出版商
Oxford University Press (OUP)
发表日期
2019-06-05
DOI
10.1093/nar/gkz533
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
- (2018) Jianhong Ou et al. BMC GENOMICS
- Chromatin states define tumour-specific T cell dysfunction and reprogramming
- (2017) Mary Philip et al. NATURE
- Universal correction of enzymatic sequence bias reveals molecular signatures of protein/DNA interactions
- (2017) André L Martins et al. NUCLEIC ACIDS RESEARCH
- Nfib Promotes Metastasis through a Widespread Increase in Chromatin Accessibility
- (2016) Sarah K. Denny et al. CELL
- β-Glucan Reverses the Epigenetic State of LPS-Induced Immunological Tolerance
- (2016) Boris Novakovic et al. CELL
- Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping
- (2016) Viviana I. Risca et al. NATURE
- G-quadruplex structures mark human regulatory chromatin
- (2016) Robert Hänsel-Hertsch et al. NATURE GENETICS
- ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing
- (2016) Xingqi Chen et al. NATURE METHODS
- Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse
- (2016) Shenglin Mei et al. NUCLEIC ACIDS RESEARCH
- hiHMM: Bayesian non-parametric joint inference of chromatin state maps
- (2015) Kyung-Ah Sohn et al. BIOINFORMATICS
- Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
- (2015) Alicia N. Schep et al. GENOME RESEARCH
- Single-cell chromatin accessibility reveals principles of regulatory variation
- (2015) Jason D. Buenrostro et al. NATURE
- dbSUPER: a database of super-enhancers in mouse and human genome
- (2015) Aziz Khan et al. NUCLEIC ACIDS RESEARCH
- Reconfiguration of nucleosome-depleted regions at distal regulatory elements accompanies DNA methylation of enhancers and insulators in cancer
- (2014) Phillippa C. Taberlay et al. GENOME RESEARCH
- Comparative analysis of metazoan chromatin organization
- (2014) Joshua W. K. Ho et al. NATURE
- A Comparison of Peak Callers Used for DNase-Seq Data
- (2014) Hashem Koohy et al. PLoS One
- Chromatin accessibility: a window into the genome
- (2014) Maria Tsompana et al. Epigenetics & Chromatin
- Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
- (2013) Housheng Hansen He et al. NATURE METHODS
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Target analysis by integration of transcriptome and ChIP-seq data with BETA
- (2013) Su Wang et al. Nature Protocols
- Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
- (2012) Caryn S. Ross-Innes et al. NATURE
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Unsupervised pattern discovery in human chromatin structure through genomic segmentation
- (2012) Michael M Hoffman et al. NATURE METHODS
- ChromHMM: automating chromatin-state discovery and characterization
- (2012) Jason Ernst et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Chromatin higher-order structures and gene regulation
- (2011) Guohong Li et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Determinants of nucleosome organization in primary human cells
- (2011) Anton Valouev et al. NATURE
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Chromatin accessibility pre-determines glucocorticoid receptor binding patterns
- (2011) Sam John et al. NATURE GENETICS
- Determinants and dynamics of genome accessibility
- (2011) Oliver Bell et al. NATURE REVIEWS GENETICS
- The sequence read archive: explosive growth of sequencing data
- (2011) Y. Kodama et al. NUCLEIC ACIDS RESEARCH
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
- (2010) R. Pique-Regi et al. GENOME RESEARCH
- Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae
- (2010) Alexandra B Lantermann et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- MEME SUITE: tools for motif discovery and searching
- (2009) T. L. Bailey et al. NUCLEIC ACIDS RESEARCH
- F-Seq: a feature density estimator for high-throughput sequence tags
- (2008) A. P. Boyle et al. BIOINFORMATICS
- High-Resolution Mapping and Characterization of Open Chromatin across the Genome
- (2008) Alan P. Boyle et al. CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now