In situ observation of conformational dynamics and protein ligand–substrate interactions in outer-membrane proteins with DEER/PELDOR spectroscopy
出版年份 2019 全文链接
标题
In situ observation of conformational dynamics and protein ligand–substrate interactions in outer-membrane proteins with DEER/PELDOR spectroscopy
作者
关键词
-
出版物
Nature Protocols
Volume 14, Issue 8, Pages 2344-2369
出版商
Springer Science and Business Media LLC
发表日期
2019-07-06
DOI
10.1038/s41596-019-0182-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- A Bioresistant Nitroxide Spin Label for In-Cell EPR Spectroscopy: In Vitro and In Oocytes Protein Structural Dynamics Studies
- (2018) Ganesan Karthikeyan et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- A Dynamic Protein–Protein Coupling between the TonB-Dependent Transporter FhuA and TonB
- (2018) Jessica L. Sarver et al. BIOCHEMISTRY
- New limits of sensitivity of site-directed spin labeling electron paramagnetic resonance for membrane proteins
- (2018) Enrica Bordignon et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Small Gd(III) Tags for Gd(III)–Gd(III) Distance Measurements in Proteins by EPR Spectroscopy
- (2018) Georgia Prokopiou et al. INORGANIC CHEMISTRY
- Conformational Coupling and trans-Inhibition in the Human Antigen Transporter Ortholog TmrAB Resolved with Dipolar EPR Spectroscopy
- (2018) Katja Barth et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Improved signal fidelity in 4-pulse DEER with Gaussian pulses
- (2018) Markus Teucher et al. JOURNAL OF MAGNETIC RESONANCE
- Cryo-electron tomography-the cell biology that came in from the cold
- (2017) Jonathan Wagner et al. FEBS LETTERS
- Effects of Periplasmic Chaperones and Membrane Thickness on BamA-Catalyzed Outer-Membrane Protein Folding
- (2017) Bob Schiffrin et al. JOURNAL OF MOLECULAR BIOLOGY
- Studying assembly of the BAM complex in native membranes by cellular solid-state NMR spectroscopy
- (2017) Cecilia Pinto et al. JOURNAL OF STRUCTURAL BIOLOGY
- The role of interfacial lipids in stabilizing membrane protein oligomers
- (2017) Kallol Gupta et al. NATURE
- Long Distance Measurements up to 160 Å in the GroEL Tetradecamer Using Q-Band DEER EPR Spectroscopy
- (2016) Thomas Schmidt et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Selective High-Resolution Detection of Membrane Protein-Ligand Interaction in Native Membranes Using Trityl-Nitroxide PELDOR
- (2016) Benesh Joseph et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Versatile Trityl Spin Labels for Nanometer Distance Measurements on Biomolecules In Vitro and within Cells
- (2016) J. Jacques Jassoy et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Allosteric Signaling Is Bidirectional in an Outer-Membrane Transport Protein
- (2016) Arthur Sikora et al. BIOPHYSICAL JOURNAL
- Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems
- (2016) Mykola Dimura et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- A Bayesian approach to quantifying uncertainty from experimental noise in DEER spectroscopy
- (2016) Thomas H. Edwards et al. JOURNAL OF MAGNETIC RESONANCE
- Ligand Induced Conformational Changes of a Membrane Transporter in E. coli Cells Observed with DEER/PELDOR
- (2016) Benesh Joseph et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Structural disorder of monomeric α-synuclein persists in mammalian cells
- (2016) Francois-Xavier Theillet et al. NATURE
- Structural basis of outer membrane protein insertion by the BAM complex
- (2016) Yinghong Gu et al. NATURE
- Lipopolysaccharide transport and assembly at the outer membrane: the PEZ model
- (2016) Suguru Okuda et al. NATURE REVIEWS MICROBIOLOGY
- Coherent pump pulses in Double Electron Electron Resonance spectroscopy
- (2016) Claudia E. Tait et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Protonation-dependent conformational dynamics of the multidrug transporter EmrE
- (2016) Reza Dastvan et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Lateral opening in the intact β-barrel assembly machinery captured by cryo-EM
- (2016) Matthew G. Iadanza et al. Nature Communications
- Distance Measurement on an Endogenous Membrane Transporter inE. coliCells and Native Membranes Using EPR Spectroscopy
- (2015) Benesh Joseph et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- Protein conformation by EPR spectroscopy using gadolinium tags clicked to genetically encoded p-azido-l-phenylalanine
- (2015) E. H. Abdelkader et al. CHEMICAL COMMUNICATIONS
- Taking the ruler to the jungle: single-molecule FRET for understanding biomolecular structure and dynamics in live cells
- (2015) Marko Sustarsic et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Efficient cellular solid-state NMR of membrane proteins by targeted protein labeling
- (2015) Lindsay A. Baker et al. JOURNAL OF BIOMOLECULAR NMR
- Carr–Purcell Pulsed Electron Double Resonance with Shaped Inversion Pulses
- (2015) Philipp E. Spindler et al. Journal of Physical Chemistry Letters
- Supramolecular assemblies underpin turnover of outer membrane proteins in bacteria
- (2015) Patrice Rassam et al. NATURE
- In vivo EPR on spin labeled colicin A reveals an oligomeric assembly of the pore-forming domain in E. coli membranes
- (2015) S. Dunkel et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Sterically shielded spin labels for in-cell EPR spectroscopy: Analysis of stability in reducing environment
- (2014) A. P. Jagtap et al. FREE RADICAL RESEARCH
- RIDME Spectroscopy with Gd(III) Centers
- (2014) Sahand Razzaghi et al. Journal of Physical Chemistry Letters
- A Genetically Encoded Spin Label for Electron Paramagnetic Resonance Distance Measurements
- (2014) Moritz J. Schmidt et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Gd(III)-PyMTA Label Is Suitable for In-Cell EPR
- (2014) Mian Qi et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Probing Protein Conformation in Cells by EPR Distance Measurements using Gd3+ Spin Labeling
- (2014) Andrea Martorana et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Membrane proteins bind lipids selectively to modulate their structure and function
- (2014) Arthur Laganowsky et al. NATURE
- Outer membrane -barrel protein folding is physically controlled by periplasmic lipid head groups and BamA
- (2014) D. Gessmann et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modeling Excluded Volume Effects for the Faithful Description of the Background Signal in Double Electron–Electron Resonance
- (2013) Daniel R. Kattnig et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Conformational dynamics and distribution of nitroxide spin labels
- (2013) Gunnar Jeschke PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
- DEER Distance Measurements on Proteins
- (2012) Gunnar Jeschke Annual Review of Physical Chemistry
- MtsslWizard: In Silico Spin-Labeling and Generation of Distance Distributions in PyMOL
- (2012) Gregor Hagelueken et al. APPLIED MAGNETIC RESONANCE
- Trityl Radicals: Spin Labels for Nanometer-Distance Measurements
- (2012) Gunnar W. Reginsson et al. CHEMISTRY-A EUROPEAN JOURNAL
- Effect of freezing conditions on distances and their distributions derived from Double Electron Electron Resonance (DEER): A study of doubly-spin-labeled T4 lysozyme
- (2012) Elka R. Georgieva et al. JOURNAL OF MAGNETIC RESONANCE
- Improved Sensitivity for Long-Distance Measurements in Biomolecules: Five-Pulse Double Electron–Electron Resonance
- (2012) Peter P. Borbat et al. Journal of Physical Chemistry Letters
- Site-directed spin-labeling of nucleotides and the use of in-cell EPR to determine long-range distances in a biologically relevant environment
- (2012) Mykhailo Azarkh et al. Nature Protocols
- High sensitivity and versatility of the DEER experiment on nitroxide radical pairs at Q-band frequencies
- (2012) Yevhen Polyhach et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Computer modeling of nitroxide spin labels on proteins
- (2011) Ma'mon M. Hatmal et al. BIOPOLYMERS
- The structural biology of β-barrel membrane proteins: a summary of recent reports
- (2011) James W Fairman et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Toward the Fourth Dimension of Membrane Protein Structure: Insight into Dynamics from Spin-Labeling EPR Spectroscopy
- (2011) Hassane S. Mchaourab et al. STRUCTURE
- Distance Determination in Proteins insideXenopus laevisOocytes by Double Electron−Electron Resonance Experiments
- (2010) Ryuji Igarashi et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Rotamer libraries of spin labelled cysteines for protein studies
- (2010) Yevhen Polyhach et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- A pulsed EPR method to determine distances between paramagnetic centers with strong spectral anisotropy and radicals: The dead-time free RIDME sequence
- (2009) Sergey Milikisyants et al. JOURNAL OF MAGNETIC RESONANCE
- Site-directed spin labeling of a genetically encoded unnatural amino acid
- (2009) M. R. Fleissner et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now