Transcriptome and Gene Coexpression Network Analyses of Two Wild Populations Provides Insight into the High-Salinity Adaptation Mechanisms of Crassostrea ariakensis

Identifying a Long QTL Cluster Across chrLG18 Associated with Salt Tolerance in Tilapia Using GWAS and QTL-seq

(2019) Dan Li Jiang et al.   MARINE BIOTECHNOLOGY

Divergence and plasticity shape adaptive potential of the Pacific oyster

(2018) Li Li et al.   Nature Ecology & Evolution

RNA sequencing analysis of transcriptional change in the freshwater mussel Elliptio complanata after environmentally relevant sodium chloride exposure

(2017) Laura S. Robertson et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Convergent Evolution of the Osmoregulation System in Decapod Shrimps

(2017) Jianbo Yuan et al.   MARINE BIOTECHNOLOGY

Transcriptomic analysis of Crassostrea sikamea × Crassostrea angulata hybrids in response to low salinity stress

(2017) Lulu Yan et al.   PLoS One

Temperature, energy metabolism, and adaptive divergence in two oyster subspecies

(2017) Ao Li et al.   Ecology and Evolution

Gene Co-Expression Network Analysis Reveals the Correlation Patterns Among Genes in Euryhaline Adaptation of Crassostrea gigas

(2016) Xuelin Zhao et al.   MARINE BIOTECHNOLOGY

Genome-Wide Analysis of Alternative Splicing Provides Insights into Stress Adaptation of the Pacific Oyster

(2016) Baoyu Huang et al.   MARINE BIOTECHNOLOGY

Meta-Analysis of Studies Using Suppression Subtractive Hybridization and Microarrays to Investigate the Effects of Environmental Stress on Gene Transcription in Oysters

(2015) Kelli Anderson et al.   PLoS One

Interactive Effects of Ocean Acidification, Elevated Temperature, and Reduced Salinity on Early-Life Stages of the Pacific Oyster

(2014) Ginger W. K. Ko et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Mitochondrial DNA sequence analysis from multiple gene fragments reveals genetic heterogeneity of Crassostrea ariakensis in East Asia

(2014) Woo-Jin Kim et al.   Genes & Genomics

Proteomics to study adaptations in marine organisms to environmental stress

(2014) Lars Tomanek   Journal of Proteomics

Rat Hepatocytes Weighted Gene Co-Expression Network Analysis Identifies Specific Modules and Hub Genes Related to Liver Regeneration after Partial Hepatectomy

(2014) Yun Zhou et al.   PLoS One

Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types

(2014) Yang Yang et al.   Nature Communications

Improved tolerance of metals in contaminated oyster larvae

(2013) Nanyan Weng et al.   AQUATIC TOXICOLOGY

Study of genetic damage in the Japanese oyster induced by an environmentally-relevant exposure to diuron: Evidence of vertical transmission of DNA damage

(2013) A. Barranger et al.   AQUATIC TOXICOLOGY

Genetic diversity and substantial population differentiation in Crassostrea hongkongensis revealed by mitochondrial DNA

(2013) Lu Li et al.   Marine Genomics

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

(2013) Jie Meng et al.   PLoS One

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic Responses to Salinity Stress in the Pacific Oyster Crassostrea gigas

(2012) Xuelin Zhao et al.   PLoS One

Impacts of climate change on European marine ecosystems: Observations, expectations and indicators

(2011) C.J.M. Philippart et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Local Adaptation in Marine Invertebrates

(2010) Eric Sanford et al.   Annual Review of Marine Science

Environmentally induced oxidative stress in aquatic animals

(2010) Volodymyr I. Lushchak   AQUATIC TOXICOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

KEGG for representation and analysis of molecular networks involving diseases and drugs

(2009) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Proline: a multifunctional amino acid

(2009) László Szabados et al.   TRENDS IN PLANT SCIENCE

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Stress tolerance of a subtropical Crassostrea virginica population to the combined effects of temperature and salinity

(2008) Olaf Heilmayer et al.   ESTUARINE COASTAL AND SHELF SCIENCE