Altered Stool Microbiota of Infants with Cystic Fibrosis Shows a Reduction in Genera Associated with Immune Programming from Birth

Inactivation of CFTR by CRISPR/Cas9 alters transcriptional regulation of inflammatory pathways and other networks

(2019) Shuyu Hao et al.   Journal of Cystic Fibrosis

Intestinal Inflammation in Children with Cystic Fibrosis Is Associated with Crohn’s-Like Microbiota Disturbances

(2019) Raphaël Enaud et al.   Journal of Clinical Medicine

Altered intestinal microbiota composition, antibiotic therapy and intestinal inflammation in children and adolescents with cystic fibrosis

(2018) Maiara Brusco de Freitas et al.   PLoS One

Adaptation of commensal proliferatingEscherichia colito the intestinal tract of young children with cystic fibrosis

(2018) Susana Matamouros et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Factors Affecting Gastrointestinal Microbiome Development in Neonates

(2018) Clara Chong et al.   Nutrients

Effect of probiotics on respiratory, gastrointestinal and nutritional outcomes in patients with cystic fibrosis: A systematic review

(2017) Jacqueline L. Anderson et al.   Journal of Cystic Fibrosis

Bacterial overgrowth, dysbiosis, inflammation, and dysmotility in the Cystic Fibrosis intestine

(2017) Jill Dorsey et al.   Journal of Cystic Fibrosis

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota

(2017) Christian Milani et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Role of the Human Breast Milk-Associated Microbiota on the Newborns’ Immune System: A Mini Review

(2017) Marco Toscano et al.   Frontiers in Microbiology

Cystic fibrosis: a clinical view

(2016) Carlo Castellani et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Relation between in Utero Arsenic Exposure and Birth Outcomes in a Cohort of Mothers and Their Newborns from New Hampshire

(2016) Diane Gilbert-Diamond et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Probiotic supplementation in children with cystic fibrosis—a systematic review

(2016) Anitha Ananthan et al.   EUROPEAN JOURNAL OF PEDIATRICS

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Routine Use of Probiotics in Preterm Infants: Longitudinal Impact on the Microbiome and Metabolome

(2016) Bashir Abdulkadir et al.   Neonatology

Treatment of pulmonary exacerbations in cystic fibrosis – could do better?

(2016) Alan Smyth   Paediatric Respiratory Reviews

The CF gastrointestinal microbiome: Structure and clinical impact

(2016) Geraint B. Rogers et al.   PEDIATRIC PULMONOLOGY

Association of Cesarean Delivery and Formula Supplementation With the Intestinal Microbiome of 6-Week-Old Infants

(2016) Juliette C. Madan et al.   JAMA Pediatrics

Cystic fibrosis and the role of gastrointestinal outcome measures in the new era of therapeutic CFTR modulation

(2015) Frank A.J.A. Bodewes et al.   Journal of Cystic Fibrosis

Pancreatic Enzyme Replacement Therapy and Coefficient of Fat Absorption in Children and Adolescents With Cystic Fibrosis

(2015) Janna W. Woestenenk et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Associations between Gut Microbial Colonization in Early Life and Respiratory Outcomes in Cystic Fibrosis

(2015) Anne G. Hoen et al.   JOURNAL OF PEDIATRICS

Nutrition Management of Cystic Fibrosis in the 21st Century

(2015) Teresa Schindler et al.   NUTRITION IN CLINICAL PRACTICE

Intestinal Lesions Are Associated with Altered Intestinal Microbiome and Are More Frequent in Children and Young Adults with Cystic Fibrosis and Cirrhosis

(2015) Thomas Flass et al.   PLoS One

Disrupted Intestinal Microbiota and Intestinal Inflammation in Children with Cystic Fibrosis and Its Restoration with Lactobacillus GG: A Randomised Clinical Trial

(2014) Eugenia Bruzzese et al.   PLoS One

Gill bacteria enable a novel digestive strategy in a wood-feeding mollusk

(2014) Roberta M. O’Connor et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Understanding How Commensal Obligate Anaerobic Bacteria Regulate Immune Functions in the Large Intestine

(2014) Eva Maier et al.   Nutrients

The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention

(2014) Thomas H Hampton et al.   Microbiome

Escherichia coli Dysbiosis Correlates With Gastrointestinal Dysfunction in Children With Cystic Fibrosis

(2013) Lucas R. Hoffman et al.   CLINICAL INFECTIOUS DISEASES

The interplay between the innate immune system and the microbiota

(2013) Christoph A Thaiss et al.   CURRENT OPINION IN IMMUNOLOGY

Association between In Utero arsenic exposure, placental gene expression, and infant birth weight: a US birth cohort study

(2013) Dennis Liang Fei et al.   Environmental Health

In utero arsenic exposure and infant infection in a United States cohort: A prospective study

(2013) Shohreh F. Farzan et al.   ENVIRONMENTAL RESEARCH

Iron supplementation does not worsen respiratory health or alter the sputum microbiome in cystic fibrosis

(2013) Alex H. Gifford et al.   Journal of Cystic Fibrosis

Gastrointestinal surgery in cystic fibrosis: A 20-year review

(2013) Paul J. Farrelly et al.   JOURNAL OF PEDIATRIC SURGERY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Unique microbial communities persist in individual cystic fibrosis patients throughout a clinical exacerbation

(2013) Katherine E Price et al.   Microbiome

Associating microbiome composition with environmental covariates using generalized UniFrac distances

(2012) Jun Chen et al.   BIOINFORMATICS

Prevalence of Streptococci and Increased Polymicrobial Diversity Associated with Cystic Fibrosis Patient Stability

(2012) L. M. Filkins et al.   JOURNAL OF BACTERIOLOGY

Gut dysbiosis in cystic fibrosis

(2012) Pauline D. Scanlan et al.   Journal of Cystic Fibrosis

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection

(2012) S. Fanning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Serial Analysis of the Gut and Respiratory Microbiome in Cystic Fibrosis in Infancy: Interaction between Intestinal and Respiratory Tracts and Impact of Nutritional Exposures

(2012) J. C. Madan et al.   mBio

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS