Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts
出版年份 2019 全文链接
标题
Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellular contexts
作者
关键词
-
出版物
BIOINFORMATICS
Volume 35, Issue 14, Pages i108-i116
出版商
Oxford University Press (OUP)
发表日期
2019-05-10
DOI
10.1093/bioinformatics/btz352
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Predicting Splicing from Primary Sequence with Deep Learning
- (2019) Kishore Jaganathan et al. CELL
- Sequential regulatory activity prediction across chromosomes with convolutional neural networks
- (2018) David R. Kelley et al. GENOME RESEARCH
- PREDICTD PaRallel Epigenomics Data Imputation with Cloud-based Tensor Decomposition
- (2018) Timothy J. Durham et al. Nature Communications
- Reproducible RNA-seq analysis using recount2
- (2017) Leonardo Collado-Torres et al. NATURE BIOTECHNOLOGY
- Genome-wide prediction of DNase I hypersensitivity using gene expression
- (2017) Weiqiang Zhou et al. Nature Communications
- Convolutional neural network architectures for predicting DNA–protein binding
- (2016) Haoyang Zeng et al. BIOINFORMATICS
- Basset: learning the regulatory code of the accessible genome with deep convolutional neural networks
- (2016) David R. Kelley et al. GENOME RESEARCH
- DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences
- (2016) Daniel Quang et al. NUCLEIC ACIDS RESEARCH
- A Grainyhead-Like 2/Ovo-Like 2 Pathway Regulates Renal Epithelial Barrier Function and Lumen Expansion
- (2015) A. Aue et al. JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues
- (2015) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning
- (2015) Babak Alipanahi et al. NATURE BIOTECHNOLOGY
- Predicting effects of noncoding variants with deep learning–based sequence model
- (2015) Jian Zhou et al. NATURE METHODS
- Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
- (2014) Richard I Sherwood et al. NATURE BIOTECHNOLOGY
- CTCF: an architectural protein bridging genome topology and function
- (2014) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- Hepatocyte nuclear factor 4-alpha involvement in liver and intestinal inflammatory networks
- (2014) Jean-Philippe Babeu WORLD JOURNAL OF GASTROENTEROLOGY
- Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
- (2013) Jason D Buenrostro et al. NATURE METHODS
- Dynamic regulation of transcriptional states by chromatin and transcription factors
- (2013) Ty C. Voss et al. NATURE REVIEWS GENETICS
- The accessible chromatin landscape of the human genome
- (2012) Robert E. Thurman et al. NATURE
- Measuring reproducibility of high-throughput experiments
- (2011) Qunhua Li et al. Annals of Applied Statistics
- Normal and disease-related biological functions of Twist1 and underlying molecular mechanisms
- (2011) Qian Qin et al. CELL RESEARCH
- Interferon Regulatory Factor-1 (IRF-1) Shapes Both Innate and CD8+ T Cell Immune Responses against West Nile Virus Infection
- (2011) James D. Brien et al. PLoS Pathogens
- Hepatocyte nuclear factor 1 and control terminal differentiation and cell fate commitment in the gut epithelium
- (2010) A. D'Angelo et al. DEVELOPMENT
- High-Resolution Mapping and Characterization of Open Chromatin across the Genome
- (2008) Alan P. Boyle et al. CELL
- Six2 Defines and Regulates a Multipotent Self-Renewing Nephron Progenitor Population throughout Mammalian Kidney Development
- (2008) Akio Kobayashi et al. Cell Stem Cell
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started