Next-Generation Sequencing Enables Spatiotemporal Resolution of Human Centromere Replication Timing

Replication timing and nuclear structure

(2018) Haiqing Fu et al.   CURRENT OPINION IN CELL BIOLOGY

SvABA: genome-wide detection of structural variants and indels by local assembly

(2018) Jeremiah A. Wala et al.   GENOME RESEARCH

Linear assembly of a human centromere on the Y chromosome

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Germline DNA replication timing shapes mammalian genome composition

(2018) Yishai Yehuda et al.   NUCLEIC ACIDS RESEARCH

Peripheral re-localization of constitutive heterochromatin advances its replication timing and impairs maintenance of silencing marks

(2018) Kathrin S Heinz et al.   NUCLEIC ACIDS RESEARCH

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize ( Zea mays ) Root Tips

(2017) Emily E. Wear et al.   PLANT CELL

Large multiallelic copy number variations in humans

(2015) Robert E Handsaker et al.   NATURE GENETICS

DNA replication origin activation in space and time

(2015) Michalis Fragkos et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Links between genome replication and chromatin landscapes

(2015) Joana Sequeira-Mendes et al.   PLANT JOURNAL

Centromere reference models for human chromosomes X and Y satellite arrays

(2014) K. H. Miga et al.   GENOME RESEARCH

Replication of alpha-satellite DNA arrays in endogenous human centromeric regions and in human artificial chromosome

(2014) Indri Erliandri et al.   NUCLEIC ACIDS RESEARCH

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

Chromatin signature of widespread monoallelic expression

(2014) Anwesha Nag et al.   eLife

Mutational heterogeneity in cancer and the search for new cancer-associated genes

(2013) Michael S. Lawrence et al.   NATURE

DNA Replication Timing

(2013) N. Rhind et al.   Cold Spring Harbor Perspectives in Biology

Differential Relationship of DNA Replication Timing to Different Forms of Human Mutation and Variation

(2012) Amnon Koren et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Replication timing in a single human chromosome 11 transferred into the Chinese hamster ovary (CHO) cell line

(2012) Yoshihisa Watanabe et al.   GENE

S. pombereplication protein Cdc18 (Cdc6) interacts with Swi6 (HP1) heterochromatin protein

(2011) Pao-Chen Li et al.   CELL CYCLE

Histone hypoacetylation is required to maintain late replication timing of constitutive heterochromatin

(2011) Corella S. Casas-Delucchi et al.   NUCLEIC ACIDS RESEARCH

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

(2010) T. Ryba et al.   GENOME RESEARCH

Epigenetically-Inherited Centromere and Neocentromere DNA Replicates Earliest in S-Phase

(2010) Amnon Koren et al.   PLoS Genetics

The heterochromatin protein Swi6/HP1 activates replication origins at the pericentromeric region and silent mating-type locus

(2009) Makoto T. Hayashi et al.   NATURE CELL BIOLOGY

Human mutation rate associated with DNA replication timing

(2009) John A Stamatoyannopoulos et al.   NATURE GENETICS

Sequencing newly replicated DNA reveals widespread plasticity in human replication timing

(2009) R. S. Hansen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global organization of replication time zones of the mouse genome

(2008) S. Farkash-Amar et al.   GENOME RESEARCH

Global Reorganization of Replication Domains During Embryonic Stem Cell Differentiation

(2008) Ichiro Hiratani et al.   PLOS BIOLOGY