标题
Learning protein constitutive motifs from sequence data
作者
关键词
-
出版物
eLife
Volume 8, Issue -, Pages -
出版商
eLife Sciences Publications, Ltd
发表日期
2019-03-01
DOI
10.7554/elife.39397
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Coevolutionary Landscape of Kinase Family Proteins: Sequence Probabilities and Functional Motifs
- (2018) Allan Haldane et al. BIOPHYSICAL JOURNAL
- Inverse statistical physics of protein sequences: a key issues review
- (2018) Simona Cocco et al. REPORTS ON PROGRESS IN PHYSICS
- Deep generative models of genetic variation capture the effects of mutations
- (2018) Adam J. Riesselman et al. NATURE METHODS
- Mutation effects predicted from sequence co-variation
- (2017) Thomas A Hopf et al. NATURE BIOTECHNOLOGY
- Emergence of Compositional Representations in Restricted Boltzmann Machines
- (2017) J. Tubiana et al. PHYSICAL REVIEW LETTERS
- ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
- (2016) Haim Ashkenazy et al. NUCLEIC ACIDS RESEARCH
- Why reinvent the wheel? Building new proteins based on ready-made parts
- (2016) Olga Khersonsky et al. PROTEIN SCIENCE
- Benchmarking Inverse Statistical Approaches for Protein Structure and Design with Exactly Solvable Models
- (2016) Hugo Jacquin et al. PLoS Computational Biology
- Coevolutionary Landscape Inference and the Context-Dependence of Mutations in Beta-Lactamase TEM-1
- (2015) Matteo Figliuzzi et al. MOLECULAR BIOLOGY AND EVOLUTION
- From residue coevolution to protein conformational ensembles and functional dynamics
- (2015) Ludovico Sutto et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Large-Scale Conformational Transitions and Dimerization Are Encoded in the Amino-Acid Sequences of Hsp70 Chaperones
- (2015) Duccio Malinverni et al. PLoS Computational Biology
- Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions
- (2014) Christopher J. Oldfield et al. Annual Review of Biochemistry
- Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
- (2014) Magnus Ekeberg et al. JOURNAL OF COMPUTATIONAL PHYSICS
- Improving Contact Prediction along Three Dimensions
- (2014) Christoph Feinauer et al. PLoS Computational Biology
- The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing
- (2014) Jaclyn K. Mann et al. PLoS Computational Biology
- Emerging methods in protein co-evolution
- (2013) David de Juan et al. NATURE REVIEWS GENETICS
- Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP
- (2013) Ruifeng Qi et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era
- (2013) H. Kamisetty et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- From Principal Component to Direct Coupling Analysis of Coevolution in Proteins: Low-Eigenvalue Modes are Needed for Structure Prediction
- (2013) Simona Cocco et al. PLoS Computational Biology
- Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction
- (2012) Elin Teppa et al. BMC BIOINFORMATICS
- Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing
- (2012) Thomas A. Hopf et al. CELL
- The Ras protein superfamily: Evolutionary tree and role of conserved amino acids
- (2012) Ana Maria Rojas et al. JOURNAL OF CELL BIOLOGY
- PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments
- (2011) David T. Jones et al. BIOINFORMATICS
- Predicting the functional impact of protein mutations: application to cancer genomics
- (2011) Boris Reva et al. NUCLEIC ACIDS RESEARCH
- Protein 3D Structure Computed from Evolutionary Sequence Variation
- (2011) Debora S. Marks et al. PLoS One
- Direct-coupling analysis of residue coevolution captures native contacts across many protein families
- (2011) F. Morcos et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- Anti-inflammatory actions of serine protease inhibitors containing the Kunitz domain
- (2010) Hiroshi Shigetomi et al. INFLAMMATION RESEARCH
- An interdomain sector mediating allostery in Hsp70 molecular chaperones
- (2010) Robert G Smock et al. Molecular Systems Biology
- High-resolution mapping of protein sequence-function relationships
- (2010) Douglas M Fowler et al. NATURE METHODS
- Protein interactions and ligand binding: From protein subfamilies to functional specificity
- (2010) A. Rausell et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Learning generative models for protein fold families
- (2010) Sivaraman Balakrishnan et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Protein Sectors: Evolutionary Units of Three-Dimensional Structure
- (2009) Najeeb Halabi et al. CELL
- Solution conformation of wild-type E. coli Hsp70 (DnaK) chaperone complexed with ADP and substrate
- (2009) E. B. Bertelsen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Representational Power of Restricted Boltzmann Machines and Deep Belief Networks
- (2008) Nicolas Le Roux et al. NEURAL COMPUTATION
- Identification of direct residue contacts in protein-protein interaction by message passing
- (2008) M. Weigt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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