Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares
出版年份 2019 全文链接
标题
Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares
作者
关键词
Gene expression, Immune cells, T cells, Microarrays, Normal distribution, PERT, Lymph nodes, Algorithms
出版物
PLoS Computational Biology
Volume 15, Issue 5, Pages e1006976
出版商
Public Library of Science (PLoS)
发表日期
2019-05-07
DOI
10.1371/journal.pcbi.1006976
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Understanding the tumor immune microenvironment (TIME) for effective therapy
- (2018) Mikhail Binnewies et al. NATURE MEDICINE
- Leveraging heterogeneity across multiple datasets increases cell-mixture deconvolution accuracy and reduces biological and technical biases
- (2018) Francesco Vallania et al. Nature Communications
- Integrative clinical genomics of metastatic cancer
- (2017) Dan R. Robinson et al. NATURE
- Simultaneous enumeration of cancer and immune cell types from bulk tumor gene expression data
- (2017) Julien Racle et al. eLife
- Assessment of tumor-infiltrating TCRVγ9Vδ2 γδ lymphocyte abundance by deconvolution of human cancers microarrays
- (2017) Marie Tosolini et al. OncoImmunology
- Tumor infiltrating lymphocytes and survival in patients with head and neck squamous cell carcinoma
- (2016) Nghia Nguyen et al. HEAD AND NECK-JOURNAL FOR THE SCIENCES AND SPECIALTIES OF THE HEAD AND NECK
- Integrative Analyses of Colorectal Cancer Show Immunoscore Is a Stronger Predictor of Patient Survival Than Microsatellite Instability
- (2016) Bernhard Mlecnik et al. IMMUNITY
- The host STING pathway at the interface of cancer and immunity
- (2016) Leticia Corrales et al. JOURNAL OF CLINICAL INVESTIGATION
- Telltale tumor infiltrating lymphocytes (TIL) in oral, head & neck cancer
- (2016) Yu Lei et al. ORAL ONCOLOGY
- Large-scale microarray profiling reveals four stages of immune escape in non-Hodgkin lymphomas
- (2016) Marie Tosolini et al. OncoImmunology
- CD8+ tumour-infiltrating lymphocytes in relation to HPV status and clinical outcome in patients with head and neck cancer after postoperative chemoradiotherapy: A multicentre study of the German cancer consortium radiation oncology group (DKTK-ROG)
- (2015) Panagiotis Balermpas et al. INTERNATIONAL JOURNAL OF CANCER
- Robust enumeration of cell subsets from tissue expression profiles
- (2015) Aaron M Newman et al. NATURE METHODS
- Tumor infiltrating lymphocytes (TIL) and prognosis in oral cavity squamous carcinoma: A preliminary study
- (2015) Gregory T. Wolf et al. ORAL ONCOLOGY
- Systematic pan-cancer analysis of tumour purity
- (2015) Dvir Aran et al. Nature Communications
- A Cell-Based Systems Biology Assessment of Human Blood to Monitor Immune Responses after Influenza Vaccination
- (2015) Kristen L. Hoek et al. PLoS One
- STING-Dependent Cytosolic DNA Sensing Promotes Radiation-Induced Type I Interferon-Dependent Antitumor Immunity in Immunogenic Tumors
- (2014) Liufu Deng et al. IMMUNITY
- Digital cell quantification identifies global immune cell dynamics during influenza infection
- (2014) Z. Altboum et al. Molecular Systems Biology
- Sparse least trimmed squares regression for analyzing high-dimensional large data sets
- (2013) Andreas Alfons et al. Annals of Applied Statistics
- MMAD: microarray microdissection with analysis of differences is a computational tool for deconvoluting cell type-specific contributions from tissue samples
- (2013) David A. Liebner et al. BIOINFORMATICS
- DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data
- (2013) Ting Gong et al. BIOINFORMATICS
- Tumour-infiltrating lymphocytes predict response to definitive chemoradiotherapy in head and neck cancer
- (2013) P Balermpas et al. BRITISH JOURNAL OF CANCER
- Inferring tumour purity and stromal and immune cell admixture from expression data
- (2013) Kosuke Yoshihara et al. Nature Communications
- PERT: A Method for Expression Deconvolution of Human Blood Samples from Varied Microenvironmental and Developmental Conditions
- (2012) Wenlian Qiao et al. PLoS Computational Biology
- Outlier Detection Using Nonconvex Penalized Regression
- (2011) Yiyuan She et al. JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION
- Optimal Deconvolution of Transcriptional Profiling Data Using Quadratic Programming with Application to Complex Clinical Blood Samples
- (2011) Ting Gong et al. PLoS One
- Cell type–specific gene expression differences in complex tissues
- (2010) Shai S Shen-Orr et al. NATURE METHODS
- In Situ Cytotoxic and Memory T Cells Predict Outcome in Patients With Early-Stage Colorectal Cancer
- (2009) Franck Pagès et al. JOURNAL OF CLINICAL ONCOLOGY
- Deconvolution of Blood Microarray Data Identifies Cellular Activation Patterns in Systemic Lupus Erythematosus
- (2009) Alexander R. Abbas et al. PLoS One
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