The genome of cowpea ( Vigna unguiculata [L.] Walp.)

Novo&Stitch: accurate reconciliation of genome assemblies via optical maps

(2018) Weihua Pan et al.   BIOINFORMATICS

A multi-parent advanced generation inter-cross (MAGIC) population for genetic analysis and improvement of cowpea (Vigna unguiculata L. Walp.)

(2018) Bao-Lam Huynh et al.   PLANT JOURNAL

QTL mapping and transcriptome analysis of cowpea reveals candidate genes for root-knot nematode resistance

(2018) Jansen Rodrigo Pereira Santos et al.   PLoS One

Identification of QTL controlling domestication-related traits in cowpea (Vigna unguiculata L. Walp)

(2018) Sassoum Lo et al.   Scientific Reports

HINGE: long-read assembly achieves optimal repeat resolution

(2017) Govinda M. Kamath et al.   GENOME RESEARCH

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

(2017) Ming-Cheng Luo et al.   NATURE

A chromosome conformation capture ordered sequence of the barley genome

(2017) Martin Mascher et al.   NATURE

Genome resources for climate-resilient cowpea, an essential crop for food security

(2017) María Muñoz-Amatriaín et al.   PLANT JOURNAL

Gain-of-Function Mutants of the Cytokinin Receptors AHK2 and AHK3 Regulate Plant Organ Size, Flowering Time and Plant Longevity

(2017) Isabel Bartrina et al.   PLANT PHYSIOLOGY

Mutation in sorghumLOW GERMINATION STIMULANT 1alters strigolactones and causesStrigaresistance

(2017) Daniel Gobena et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Higher classification sensitivity of short metagenomic reads with CLARK- S

(2016) Rachid Ounit et al.   BIOINFORMATICS

Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis

(2016) Aiko Iwata-Otsubo et al.   CHROMOSOME RESEARCH

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms

(2016) Zhen Li et al.   PLANT CELL

TheVigna unguiculataGene Expression Atlas (VuGEA) fromde novoassembly and quantification of RNA-seq data provides insights into seed maturation mechanisms

(2016) Shaolun Yao et al.   PLANT JOURNAL

Assembly of long error-prone reads using de Bruijn graphs

(2016) Yu Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool

(2015) Jennifer M. Shelton et al.   BMC GENOMICS

Human inversions and their functional consequences

(2015) Marta Puig et al.   Briefings in Functional Genomics

Intra- and interchromosomal rearrangements between cowpea [Vigna unguiculata (L.) Walp.] and common bean (Phaseolus vulgaris L.) revealed by BAC-FISH

(2015) Emanuelle Varão Vasconcelos et al.   CHROMOSOME RESEARCH

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

(2015) Konstantin Berlin et al.   NATURE BIOTECHNOLOGY

Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication

(2015) Kai Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome

(2015) Hiroaki Sakai et al.   Scientific Reports

ALLMAPS: robust scaffold ordering based on multiple maps

(2015) Haibao Tang et al.   GENOME BIOLOGY

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Rapid detection of structural variation in a human genome using nanochannel-based genome mapping technology

(2015) Hongzhi Cao et al.   GigaScience

A reference genome for common bean and genome-wide analysis of dual domestications

(2014) Jeremy Schmutz et al.   NATURE GENETICS

InterMine: extensive web services for modern biology

(2014) Alex Kalderimis et al.   NUCLEIC ACIDS RESEARCH

Molecular cytogenetic characterisation and phylogenetic analysis of the seven cultivatedVignaspecies (Fabaceae)

(2014) C.-W. She et al.   PLANT BIOLOGY

Genome sequence of mungbean and insights into evolution within Vigna species

(2014) Yang Jae Kang et al.   Nature Communications

QTL mapping and epistatic interaction analysis in asparagus bean for several characterized and novel horticulturally important traits

(2013) Pei Xu et al.   BMC GENETICS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

(2011) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats

(2011) Andrew J. Alverson et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Genome sequence of the palaeopolyploid soybean

(2010) Jeremy Schmutz et al.   NATURE

How and Why Chromosome Inversions Evolve

(2010) Mark Kirkpatrick   PLOS BIOLOGY

Climate change and variability in Sub-Saharan Africa: a review of current and future trends and impacts on agriculture and food security

(2010) Julius H. Kotir   ENVIRONMENT DEVELOPMENT AND SUSTAINABILITY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

(2009) Ken Chen et al.   NATURE METHODS

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

(2009) W. Muchero et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Sequencing and analysis of the gene-rich space of cowpea

(2008) Michael P Timko et al.   BMC GENOMICS

Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

(2008) Pierre Abad et al.   NATURE BIOTECHNOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

Efficient and Accurate Construction of Genetic Linkage Maps from the Minimum Spanning Tree of a Graph

(2008) Yonghui Wu et al.   PLoS Genetics