TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets
出版年份 2019 全文链接
标题
TagGraph reveals vast protein modification landscapes from large tandem mass spectrometry datasets
作者
关键词
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出版物
NATURE BIOTECHNOLOGY
Volume 37, Issue 4, Pages 469-479
出版商
Springer Nature
发表日期
2019-04-02
DOI
10.1038/s41587-019-0067-5
参考文献
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
- (2017) Andy T Kong et al. NATURE METHODS
- Application of de Novo Sequencing to Large-Scale Complex Proteomics Data Sets
- (2016) Arun Devabhaktuni et al. JOURNAL OF PROTEOME RESEARCH
- Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets
- (2016) Johannes Griss et al. NATURE METHODS
- Novor: Real-Time Peptide de Novo Sequencing Software
- (2015) Bin Ma JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Illuminating the dark matter of shotgun proteomics
- (2015) Owen S Skinner et al. NATURE BIOTECHNOLOGY
- A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides
- (2015) Joel M Chick et al. NATURE BIOTECHNOLOGY
- SnapShot: Histone Modifications
- (2014) He Huang et al. CELL
- Software eyes for protein post-translational modifications
- (2014) Seungjin Na et al. MASS SPECTROMETRY REVIEWS
- Nonenzymatic Protein Acylation as a Carbon Stress Regulated by Sirtuin Deacylases
- (2014) Gregory R. Wagner et al. MOLECULAR CELL
- Acetylation dynamics and stoichiometry in Saccharomyces cerevisiae
- (2014) B. T. Weinert et al. Molecular Systems Biology
- A draft map of the human proteome
- (2014) Min-Sik Kim et al. NATURE
- Mass-spectrometry-based draft of the human proteome
- (2014) Mathias Wilhelm et al. NATURE
- COSMIC: exploring the world's knowledge of somatic mutations in human cancer
- (2014) Simon A. Forbes et al. NUCLEIC ACIDS RESEARCH
- UniProt: a hub for protein information
- (2014) NUCLEIC ACIDS RESEARCH
- Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling
- (2014) Kirti Sharma et al. Cell Reports
- Proteogenomic Database Construction Driven from Large Scale RNA-seq Data
- (2013) Sunghee Woo et al. JOURNAL OF PROTEOME RESEARCH
- Transferred Subgroup False Discovery Rate for Rare Post-translational Modifications Detected by Mass Spectrometry
- (2013) Yan Fu et al. MOLECULAR & CELLULAR PROTEOMICS
- LuciPHOr: Algorithm for Phosphorylation Site Localization with False Localization Rate Estimation Using Modified Target-Decoy Approach
- (2013) Damian Fermin et al. MOLECULAR & CELLULAR PROTEOMICS
- Immunoaffinity Enrichment and Mass Spectrometry Analysis of Protein Methylation
- (2013) Ailan Guo et al. MOLECULAR & CELLULAR PROTEOMICS
- Defining the RGG/RG Motif
- (2013) Palaniraja Thandapani et al. MOLECULAR CELL
- A review of statistical methods for protein identification using tandem mass spectrometry
- (2013) William Noble et al. Statistics and Its Interface
- The mutational landscape of phosphorylation signaling in cancer
- (2013) Jüri Reimand et al. Scientific Reports
- High-pH reversed-phase chromatography with fraction concatenation for 2D proteomic analysis
- (2012) Feng Yang et al. Expert Review of Proteomics
- Phosphorylation network dynamics in the control of cell cycle transitions
- (2012) D. Fisher et al. JOURNAL OF CELL SCIENCE
- Lysine Succinylation and Lysine Malonylation in Histones
- (2012) Zhongyu Xie et al. MOLECULAR & CELLULAR PROTEOMICS
- Allosteric post-translational modification codes
- (2012) Ruth Nussinov et al. TRENDS IN BIOCHEMICAL SCIENCES
- Protein N-terminal acetyltransferases: when the start matters
- (2012) Kristian K. Starheim et al. TRENDS IN BIOCHEMICAL SCIENCES
- Post-translational modification: nature's escape from genetic imprisonment and the basis for dynamic information encoding
- (2012) Sudhakaran Prabakaran et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- PeaksPTM: Mass Spectrometry-Based Identification of Peptides with Unspecified Modifications
- (2011) Xi Han et al. JOURNAL OF PROTEOME RESEARCH
- Target-Decoy Approach and False Discovery Rate: When Things May Go Wrong
- (2011) Nitin Gupta et al. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY
- Fast Multi-blind Modification Search through Tandem Mass Spectrometry
- (2011) Seungjin Na et al. MOLECULAR & CELLULAR PROTEOMICS
- A large-scale method to measure absolute protein phosphorylation stoichiometries
- (2011) Ronghu Wu et al. NATURE METHODS
- Refinements to Label Free Proteome Quantitation: How to Deal with Peptides Shared by Multiple Proteins
- (2010) Ying Zhang et al. ANALYTICAL CHEMISTRY
- A Tissue-Specific Atlas of Mouse Protein Phosphorylation and Expression
- (2010) Edward L. Huttlin et al. CELL
- Asparagine and Aspartate Hydroxylation of the Cytoskeletal Ankyrin Family Is Catalyzed by Factor-inhibiting Hypoxia-inducible Factor
- (2010) Ming Yang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Coexistence of 2 types of atrial tachycardias and right ventricular outflow tract tachycardia
- (2010) Jing Xu et al. JOURNAL OF ELECTROCARDIOLOGY
- pNovo:De novoPeptide Sequencing and Identification Using HCD Spectra
- (2010) Hao Chi et al. JOURNAL OF PROTEOME RESEARCH
- A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics
- (2010) Alexey I. Nesvizhskii Journal of Proteomics
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis
- (2010) J. V. Olsen et al. Science Signaling
- Collagen Structure and Stability
- (2009) Matthew D. Shoulders et al. Annual Review of Biochemistry
- Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
- (2009) Da Wei Huang et al. Nature Protocols
- A guide to the Proteomics Identifications Database proteomics data repository
- (2009) Juan Antonio Vizcaíno et al. PROTEOMICS
- Modification-specific proteomics: Strategies for characterization of post-translational modifications using enrichment techniques
- (2009) Yingming Zhao et al. PROTEOMICS
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
- (2008) Sangtae Kim et al. JOURNAL OF PROTEOME RESEARCH
- Significance Analysis of Spectral Count Data in Label-free Shotgun Proteomics
- (2008) Hyungwon Choi et al. MOLECULAR & CELLULAR PROTEOMICS
- mzML: A single, unifying data format for mass spectrometer output
- (2008) Eric Deutsch PROTEOMICS
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