Utilization of carbon sources in the rice rhizosphere and nonrhizosphere soils with different long-term fertilization management

Arbuscular mycorrhizal inoculum sources influence bacterial, archaeal, and fungal communities’ structures of historically dioxin/furan-contaminated soil but not the pollutant dissipation rate

(2018) H. Meglouli et al.   MYCORRHIZA

A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies

(2017) Yu Cao et al.   Frontiers in Microbiology

Whole-genome sequencing in the prediction of antimicrobial resistance

(2016) Kok-Gan Chan   Expert Review of Anti-Infective Therapy

Methane and nitrous oxide emissions as affected by long-term fertilizer management from double-cropping paddy fields in Southern China

(2016) H.-M. TANG et al.   JOURNAL OF AGRICULTURAL SCIENCE

Methane and nitrous oxide emissions as affected by long-term fertilizer management from double-cropping paddy fields in Southern China

(2016) H.-M. TANG et al.   JOURNAL OF AGRICULTURAL SCIENCE

Evolution of bacterial communities in the wheat crop rhizosphere

(2014) Suzanne Donn et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

(2013) Etienne Yergeau et al.   ISME Journal

Long-Term Nitrogen Amendment Alters the Diversity and Assemblage of Soil Bacterial Communities in Tallgrass Prairie

(2013) Joseph D. Coolon et al.   PLoS One

Characterization of Liaoning Cashmere Goat Transcriptome: Sequencing, De Novo Assembly, Functional Annotation and Comparative Analysis

(2013) Hongliang Liu et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil

(2012) Alexandre de Menezes et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial Structures, Functions, and Metabolic Pathways in Wastewater Treatment Bioreactors Revealed Using High-Throughput Sequencing

(2012) Lin Ye et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

The metatranscriptome of a deep-sea hydrothermal plume is dominated by water column methanotrophs and lithotrophs

(2012) Ryan A Lesniewski et al.   ISME Journal

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Identification of Active Denitrifiers in Rice Paddy Soil by DNA- and RNA-Based Analyses

(2012) Megumi Yoshida et al.   MICROBES AND ENVIRONMENTS

Changes in Bacterial Community Structure of Agricultural Land Due to Long-Term Organic and Chemical Amendments

(2012) Vasvi Chaudhry et al.   MICROBIAL ECOLOGY

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge

(2012) Ke Yu et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Effect of long-term fertilization on bacterial composition in rice paddy soil

(2011) Minna Wu et al.   BIOLOGY AND FERTILITY OF SOILS

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment

(2011) Yanmei Shi et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of extracellular enzyme activities and microbial community in both the rhizosphere and bulk soil to long-term fertilization practices in a fluvo-aquic soil

(2011) Chao Ai et al.   GEODERMA

A novel fungal family of oligopeptide transporters identified by functional metatranscriptomics of soil eukaryotes

(2011) Coralie Damon et al.   ISME Journal

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Gut Microbial Gene Expression in Mother-Fed and Formula-Fed Piglets

(2010) Valeriy Poroyko et al.   PLoS One

Diazotrophic diversity, nifH gene expression and nitrogenase activity in a rice paddy field in Fujian, China

(2009) Lotta Mårtensson et al.   PLANT AND SOIL

Substrate inputs and pH as factors controlling microbial biomass, activity and community structure in an arable soil

(2009) J.C. Aciego Pietri et al.   SOIL BIOLOGY & BIOCHEMISTRY

Abundance and community composition of methanotrophs in a Chinese paddy soil under long-term fertilization practices

(2008) Yong Zheng et al.   JOURNAL OF SOILS AND SEDIMENTS