Complete plastome sequences of Picea asperata and P. crassifolia and comparative analyses with P. abies and P. morrisonicola

Phylogenomic evidence for ancient recombination between plastid genomes of the Cupressus-Juniperus-Xanthocyparis complex (Cupressaceae)

(2018) Andan Zhu et al.   BMC EVOLUTIONARY BIOLOGY

Interspecific Plastome Recombination Reflects Ancient Reticulate Evolution in Picea (Pinaceae)

(2017) Alexis R. Sullivan et al.   MOLECULAR BIOLOGY AND EVOLUTION

Large-Scale Comparative Analysis Reveals the Mechanisms Driving Plastomic Compaction, Reduction, and Inversions in Conifers II (Cupressophytes)

(2016) Chung-Shien Wu et al.   Genome Biology and Evolution

Non-functional plastid ndh gene fragments are present in the nuclear genome of Norway spruce (Picea abies L. Karsch): insights from in silico analysis of nuclear and organellar genomes

(2016) Sonali Sachin Ranade et al.   MOLECULAR GENETICS AND GENOMICS

Late Pleistocene climate change promoted divergence betweenPicea asperataandP. crassifoliaon the Qinghai-Tibet Plateau through recent bottlenecks

(2016) Hao Bi et al.   Ecology and Evolution

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

(2015) Shaun D. Jackman et al.   Genome Biology and Evolution

Mitochondrial introgression and complex biogeographic history of the genus Picea

(2015) Jin-Hua Ran et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Plastid genomes reveal support for deep phylogenetic relationships and extensive rate variation among palms and other commelinid monocots

(2015) Craig F. Barrett et al.   NEW PHYTOLOGIST

The complete plastid genome sequence ofPicea jezoensis(Pinaceae: Piceoideae)

(2015) Jong Cheol Yang et al.   Mitochondrial DNA Part A

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

Whole plastome sequencing reveals deep plastid divergence and cytonuclear discordance between closely related balsam poplars,Populus balsamiferaandP. trichocarpa(Salicaceae)

(2014) Daisie I. Huang et al.   NEW PHYTOLOGIST

Genetic and morphological structure of a spruce hybrid (Picea sitchensis × P. glauca ) zone along a climatic gradient

(2013) Jill A. Hamilton et al.   AMERICAN JOURNAL OF BOTANY

Population genetic evidence for speciation pattern and gene flow between Picea wilsonii, P. morrisonicola and P. neoveitchii

(2013) Jiabin Zou et al.   ANNALS OF BOTANY

Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data

(2013) Inanc Birol et al.   BIOINFORMATICS

Chloroplast Phylogenomics Indicates that Ginkgo biloba Is Sister to Cycads

(2013) Chung-Shien Wu et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A new phylogeny for the genus Picea from plastid, mitochondrial, and nuclear sequences

(2013) Jared D. Lockwood et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Norway spruce genome sequence and conifer genome evolution

(2013) Björn Nystedt et al.   NATURE

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Uncovering the Protein Translocon at the Chloroplast Inner Envelope Membrane

(2013) S. Kikuchi et al.   SCIENCE

Origin and demographic history of the endemic Taiwan spruce (Picea morrisonicola)

(2013) Sofia Bodare et al.   Ecology and Evolution

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

Molecular phylogenetic reconstruction of Osmanthus Lour. (Oleaceae) and related genera based on three chloroplast intergenic spacers

(2011) Shi-Quan Guo et al.   PLANT SYSTEMATICS AND EVOLUTION

Comparative Chloroplast Genomics Reveals the Evolution of Pinaceae Genera and Subfamilies

(2010) Ching-Ping Lin et al.   Genome Biology and Evolution

Discordant mtDNA and cpDNA phylogenies indicate geographic speciation and reticulation as driving factors for the diversification of the genus Picea

(2010) Marie Bouillé et al.   Tree Genetics & Genomes

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes

(2009) Matthew Parks et al.   BMC BIOLOGY

More introgression with less gene flow: chloroplast vs. mitochondrial DNA in thePicea asperatacomplex in China, and comparison with other Conifers

(2009) FANG K. DU et al.   MOLECULAR ECOLOGY

Disentangling interactions between adaptive divergence and gene flow when ecology drives diversification

(2008) Katja Räsänen et al.   ECOLOGY LETTERS