The wild sweetpotato (Ipomoea trifida) genome provides insights into storage root development

Parallel evolution of storage roots in morning glories (Convolvulaceae)

(2018) Lauren A. Eserman et al.   BMC PLANT BIOLOGY

Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia

(2018) Pablo Muñoz-Rodríguez et al.   CURRENT BIOLOGY

Starch content differences between two sweet potato accessions are associated with specific changes in gene expression

(2018) Songtao Yang et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

(2018) J. Y. Feng et al.   BMC PLANT BIOLOGY

Review: The Arabidopsis β-amylase (BAM) gene family: Diversity of form and function

(2018) Jonathan D. Monroe et al.   PLANT SCIENCE

Allele-defined genome of the autopolyploid sugarcane Saccharum spontaneum L.

(2018) Jisen Zhang et al.   NATURE GENETICS

Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement

(2018) Shan Wu et al.   Nature Communications

Hybrid assembly of the large and highly repetitive genome ofAegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

(2017) Aleksey V. Zimin et al.   GENOME RESEARCH

Horizontal Gene Transfer Contributes to Plant Evolution: The Case of Agrobacterium T-DNAs

(2017) Dora G. Quispe-Huamanquispe et al.   Frontiers in Plant Science

Comparative Transcriptome Analysis Reveals Critical Function of Sucrose Metabolism Related-Enzymes in Starch Accumulation in the Storage Root of Sweet Potato

(2017) Kai Zhang et al.   Frontiers in Plant Science

A genome-wide BAC-end sequence survey provides first insights into sweetpotato (Ipomoea batatas (L.) Lam.) genome composition

(2016) Zengzhi Si et al.   BMC GENOMICS

Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines

(2016) Zhiqiang Zhou et al.   BMC GENOMICS

Recent Progress in Molecular Studies on Storage Root Formation in Sweetpotato (Ipomoea batatas)

(2016) Masaru TANAKA   JARQ-JAPAN AGRICULTURAL RESEARCH QUARTERLY

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases

(2016) Yi Zheng et al.   Molecular Plant

Construction of a high-density genetic map of Ziziphus jujuba Mill. using genotyping by sequencing technology

(2016) Zhong Zhang et al.   Tree Genetics & Genomes

Genome sequence and analysis of the Japanese morning glory Ipomoea nil

(2016) Atsushi Hoshino et al.   Nature Communications

Altered Phenylpropanoid Metabolism in the Maize Lc-Expressed Sweet Potato (Ipomoea batatas) Affects Storage Root Development

(2016) Hongxia Wang et al.   Scientific Reports

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Temporal patterns of gene expression associated with tuberous root formation and development in sweetpotato (Ipomoea batatas)

(2015) Zhangying Wang et al.   BMC PLANT BIOLOGY

Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don

(2015) H. Hirakawa et al.   DNA RESEARCH

Acclimation of metabolism to light inArabidopsis thaliana: the glucose 6-phosphate/phosphate translocator GPT2 directs metabolic acclimation

(2015) BETH C. DYSON et al.   PLANT CELL AND ENVIRONMENT

The genome of cultivated sweet potato containsAgrobacteriumT-DNAs with expressed genes: An example of a naturally transgenic food crop

(2015) Tina Kyndt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conventional breeding, marker-assisted selection, genomic selection and inbreeding in clonally propagated crops: a case study for cassava

(2015) Hernán Ceballos et al.   THEORETICAL AND APPLIED GENETICS

Morphological characteristics, anatomical structure and gene expression: novel insights into gibberellin biosynthesis and perception during carrot growth and development

(2015) Guang-Long Wang et al.   Horticulture Research

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

(2014) Rei Kajitani et al.   GENOME RESEARCH

Tangled up in two: a burst of genome duplications at the end of the Cretaceous and the consequences for plant evolution

(2014) Kevin Vanneste et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Β-Amylase from Starchless Seeds of Trigonella Foenum-Graecum and Its Localization in Germinating Seeds

(2014) Garima Srivastava et al.   PLoS One

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Identification of QTLs for storage root yield in sweetpotato

(2014) Hui Li et al.   SCIENTIA HORTICULTURAE

A RAD-based linkage map and comparative genomics in the gudgeons (genus Gnathopogon, Cyprinidae)

(2013) Ryo Kakioka et al.   BMC GENOMICS

Disentangling the Origins of Cultivated Sweet Potato (Ipomoea batatas (L.) Lam.)

(2013) Caroline Roullier et al.   PLoS One

From the Cover: Cozzarelli Prize Winner: Historical collections reveal patterns of diffusion of sweet potato in Oceania obscured by modern plant movements and recombination

(2013) C. Roullier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Multiple biological functions of sporamin related to stress tolerance in sweet potato (Ipomoea batatas Lam)

(2012) Rajendran Senthilkumar et al.   BIOTECHNOLOGY ADVANCES

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

(2012) S. Huang et al.   GENOME RESEARCH

The oyster genome reveals stress adaptation and complexity of shell formation

(2012) Guofan Zhang et al.   NATURE

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology

(2012) Adam C. English et al.   PLoS One

Starch accumulation and starch related genes expression in novel inter-specific inbred squash line and their parents during fruit development

(2012) Korakot Nakkanong et al.   SCIENTIA HORTICULTURAE

SNP in starch biosynthesis genes associated with nutritional and functional properties of rice

(2012) Ardashir Kharabian-Masouleh et al.   Scientific Reports

Multipoint maximum likelihood mapping in a full-sib family of an outbreeding species

(2011) J. W. VAN OOIJEN   Genetics Research

Functions and Application of the AP2/ERF Transcription Factor Family in Crop ImprovementF

(2011) Zhao-Shi Xu et al.   Journal of Integrative Plant Biology

Genome sequence and analysis of the tuber crop potato

(2011) Xun Xu et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Wx intron variations support an allohexaploid origin of the sweetpotato [Ipomoea batatas (L.) Lam]

(2010) Ming Gao et al.   EUPHYTICA

SRD1 is involved in the auxin-mediated initial thickening growth of storage root by enhancing proliferation of metaxylem and cambium cells in sweetpotato (Ipomoea batatas)

(2010) Seol Ah Noh et al.   JOURNAL OF EXPERIMENTAL BOTANY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Mechanism of Auxin-Regulated Gene Expression in Plants

(2009) Elisabeth J. Chapman et al.   Annual Review of Genetics

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

The evolutionary significance of ancient genome duplications

(2009) Yves Van de Peer et al.   NATURE REVIEWS GENETICS

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

(2009) Rui Shi et al.   PLANT AND CELL PHYSIOLOGY

IbMADS1 (Ipomoea batatas MADS-box 1 gene) is Involved in Tuberous Root Initiation in Sweet Potato (Ipomoea batatas)

(2008) Amy Tsu Ku et al.   ANNALS OF BOTANY

Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps

(2008) H. Tang et al.   GENOME RESEARCH

Expression of class I knotted1-like homeobox genes in the storage roots of sweetpotato (Ipomoea batatas)

(2008) Masaru Tanaka et al.   JOURNAL OF PLANT PHYSIOLOGY

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY