Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species

The mitochondrial genome of the plant-pathogenic fungus Stemphylium lycopersici uncovers a dynamic structure due to repetitive and mobile elements

(2017) Mario Emilio Ernesto Franco et al.   PLoS One

Comparative mitochondrial genomics toward exploring molecular markers in the medicinal fungus Cordyceps militaris

(2017) Shu Zhang et al.   Scientific Reports

Intron Derived Size Polymorphism in the Mitochondrial Genomes of Closely Related Chrysoporthe Species

(2016) Aquillah Mumo Kanzi et al.   PLoS One

Phylogenetic Analyses of Armillaria Reveal at Least 15 Phylogenetic Lineages in China, Seven of Which Are Associated with Cultivated Gastrodia elata

(2016) Ting Guo et al.   PLoS One

Comparison of mitochondrial genomes provides insights into intron dynamics and evolution in the caterpillar fungus Cordyceps militaris

(2015) Yongjie Zhang et al.   FUNGAL GENETICS AND BIOLOGY

Complete mitochondrial genome of the medicinal fungus Ophiocordyceps sinensis

(2015) Yi Li et al.   Scientific Reports

Characterization and Phylogenetic Analysis of the Mitochondrial Genome of Shiraia bambusicola Reveals Special Features in the Order of Pleosporales

(2015) Xiao-Ye Shen et al.   PLoS One

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Mobile elements and mitochondrial genome expansion in the soil fungus and potato pathogenRhizoctonia solaniAG-3

(2014) Liliana Losada et al.   FEMS MICROBIOLOGY LETTERS

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial Genome of Phlebia radiata Is the Second Largest (156 kbp) among Fungi and Features Signs of Genome Flexibility and Recent Recombination Events

(2014) Heikki Salavirta et al.   PLoS One

The 203 kbp Mitochondrial Genome of the Phytopathogenic Fungus Sclerotinia borealis Reveals Multiple Invasions of Introns and Genomic Duplications

(2014) Andrey V. Mardanov et al.   PLoS One

Evidence for inter-specific recombination among the mitochondrial genomes of Fusarium species in the Gibberella fujikuroi complex

(2013) Gerda Fourie et al.   BMC GENOMICS

Transcriptome of an Armillaria root disease pathogen reveals candidate genes involved in host substrate utilization at the host-pathogen interface

(2013) A. L. Ross-Davis et al.   FOREST PATHOLOGY

The 135 kbp mitochondrial genome of Agaricus bisporus is the largest known eukaryotic reservoir of group I introns and plasmid-related sequences

(2013) Cyril Férandon et al.   FUNGAL GENETICS AND BIOLOGY

Comparative analysis of mitochondrial genomes from closely related Rhynchosporium species reveals extensive intron invasion

(2013) Stefano F.F. Torriani et al.   FUNGAL GENETICS AND BIOLOGY

Mitochondrial Genome Rearrangements in Glomus Species Triggered by Homologous Recombination between Distinct mtDNA Haplotypes

(2013) Denis Beaudet et al.   Genome Biology and Evolution

Rapid Mitochondrial Genome Evolution through Invasion of Mobile Elements in Two Closely Related Species of Arbuscular Mycorrhizal Fungi

(2013) Denis Beaudet et al.   PLoS One

Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex

(2012) Angelo Duò et al.   BMC GENOMICS

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

(2012) Vinita Joardar et al.   BMC GENOMICS

The mitochondrial genome of the white-rot fungus Flammulina velutipes

(2012) Hyeokjun Yoon et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Comparative analysis of mitochondrial genomes ofRhizophagus irregularis -syn.Glomus irregulare- reveals a polymorphism induced by variability generating elements

(2012) Damien Formey et al.   NEW PHYTOLOGIST

Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame

(2011) Rasha M. Al-Reedy et al.   FUNGAL GENETICS AND BIOLOGY

Effects of biotic disturbances on forest carbon cycling in the United States and Canada

(2011) Jeffrey A. Hicke et al.   GLOBAL CHANGE BIOLOGY

Secrets of the subterranean pathosystem of Armillaria

(2011) KENDRA BAUMGARTNER et al.   MOLECULAR PLANT PATHOLOGY

Homing Endonucleases: From Microbial Genetic Invaders to Reagents for Targeted DNA Modification

(2011) Barry L. Stoddard   STRUCTURE

Phylogenomic evidence for a common ancestor of mitochondria and the SAR11 clade

(2011) J. Cameron Thrash et al.   Scientific Reports

Mitochondrial inheritance in fungi

(2010) Christoph W Basse   CURRENT OPINION IN MICROBIOLOGY

Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens Phakopsora pachyrhizi and P. meibomiae

(2010) Christine L. Stone et al.   MYCOLOGIA

The Agaricus bisporus cox1 Gene: The Longest Mitochondrial Gene and the Largest Reservoir of Mitochondrial Group I Introns

(2010) Cyril Férandon et al.   PLoS One

CSA: An efficient algorithm to improve circular DNA multiple alignment

(2009) Francisco Fernandes et al.   BMC BIOINFORMATICS

Recent dermatophyte divergence revealed by comparative and phylogenetic analysis of mitochondrial genomes

(2009) Yuan Wu et al.   BMC GENOMICS

The Cryphonectria parasitica mitochondrial rns gene: Plasmid-like elements, introns and homing endonucleases

(2009) Claudia B. Monteiro-Vitorello et al.   FUNGAL GENETICS AND BIOLOGY

Genes within Genes: Multiple LAGLIDADG Homing Endonucleases Target the Ribosomal Protein S3 Gene Encoded within an rnl Group I Intron of Ophiostoma and Related Taxa

(2009) J. Sethuraman et al.   MOLECULAR BIOLOGY AND EVOLUTION

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The mitochondrial genome of the Basidiomycete fungusPleurotus ostreatus(oyster mushroom)

(2008) Yong Wang et al.   FEMS MICROBIOLOGY LETTERS

Frequent, Phylogenetically Local Horizontal Transfer of the cox1 Group I Intron in Flowering Plant Mitochondria

(2008) M. V. Sanchez-Puerta et al.   MOLECULAR BIOLOGY AND EVOLUTION

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reevaluation of the cox1 Group I Intron in Araceae and Angiosperms Indicates a History Dominated by Loss rather than Horizontal Transfer

(2007) N. Cusimano et al.   MOLECULAR BIOLOGY AND EVOLUTION