4.4 Article

How do ribozymes accommodate additional water molecules upon hydrostatic compression deep into the kilobar pressure regime?

期刊

BIOPHYSICAL CHEMISTRY
卷 252, 期 -, 页码 -

出版社

ELSEVIER
DOI: 10.1016/j.bpc.2019.106192

关键词

High-pressure conditions; Ribozymes; Hydrogen-bonding; Interstitial water; Replica-exchange molecular dynamics; RNA

资金

  1. Deutsche Forschungsgemeinschaft (DFG) Research Unit FOR 1979 Exploring the Dynamical Landscape of Biomolecular Systems by Pressure Perturbation [MA 1547/17]
  2. DFG [EXC 2033, 390677874]

向作者/读者索取更多资源

Solvation by water plays an important role in the functional dynamics of biomacromolecules such as proteins or nucleic acids. This suggests that changes in solvation might drastically affect their functionality. Among other solvation stressors such as temperature, cosolvents or crowding agents, applying pressure in the multi-kilobar regime is known to modulate the hydration pattern of solutes, from simple to complex. In this study, we simulated a hairpin ribozyme, being catalytic RNA, using extensive replica-exchange molecular dynamics simulations at ambient and high hydrostatic pressure conditions. By dividing the coordinating water molecules present in the first solvation shell of the ribozyme into two subgroups, namely H-bonding and interstitial water, we discover that the H-bond network remains essentially unaffected even upon compression to 10 kbar compared to the 1 bar reference pressure. In stark contrast, the contribution of interstitial water significantly increases upon compression to 10 kbar, which discloses a differential effect of pressure perturbation on the solvation state of this ribozyme. In simple words: the increased water density due to compressing the aqueous ribozyme solution is locally accommodated by mainly pushing water molecules into the interstitial space offered by the existing H-bonding network of this RNA species. Given the molecularly generic nature of this finding, we expect it to hold true also for other biomacromolecules in aqueous solutions at high hydrostatic pressures, such as DNA or proteins.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.4
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

暂无数据
暂无数据