Genetic resiliency and the Black Death: No apparent loss of mitogenomic diversity due to the Black Death in medieval London and Denmark

Ancient DNA study reveals HLA susceptibility locus for leprosy in medieval Europeans

(2018) Ben Krause-Kyora et al.   Nature Communications

Extending the spectrum of DNA sequences retrieved from ancient bones and teeth

(2017) Isabelle Glocke et al.   GENOME RESEARCH

Diverse origin of mitochondrial lineages in Iron Age Black Sea Scythians

(2017) Anna Juras et al.   Scientific Reports

Stressing out in medieval Denmark: An investigation of dental enamel defects and age at death in two medieval Danish cemeteries

(2017) Julia A Gamble et al.   International Journal of Paleopathology

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Variation and association to diabetes in 2000 full mtDNA sequences mined from an exome study in a Danish population

(2014) Shengting Li et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

leeHom: adaptor trimming and merging for Illumina sequencing reads

(2014) Gabriel Renaud et al.   NUCLEIC ACIDS RESEARCH

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The History of Slavs Inferred from Complete Mitochondrial Genome Sequences

(2013) Marta Mielnik-Sikorska et al.   PLoS One

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mobility, mortality, and the middle ages: Identification of migrant individuals in a 14th century black death cemetery population

(2012) E.J. Kendall et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Stature and frailty during the Black Death: the effect of stature on risks of epidemic mortality in London, A.D. 1348–1350

(2012) Sharon N. DeWitte et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

A draft genome of Yersinia pestis from victims of the Black Death

(2011) Kirsten I. Bos et al.   NATURE

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death

(2011) V. J. Schuenemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet in medieval Denmark: a regional and temporal comparison

(2010) Cassady Yoder   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

New insights from old bones: DNA preservation and degradation in permafrost preserved mammoth remains

(2009) Carsten Schwarz et al.   NUCLEIC ACIDS RESEARCH

Selectivity of Black Death mortality with respect to preexisting health

(2008) S. N. DeWitte et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA