KGCAK: a K-mer based database for genome-wide phylogeny and complexity evaluation

Inferring phylogenies of evolving sequences without multiple sequence alignment

(2014) Cheong Xin Chan et al.   Scientific Reports

Informed and automated k-mer size selection for genome assembly

(2013) R. Chikhi et al.   BIOINFORMATICS

AGP: A Multimethods Web Server for Alignment-Free Genome Phylogeny

(2013) J. Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

DECOD: fast and accurate discriminative DNA motif finding

(2011) Peter Huggins et al.   BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

The calculation of information and organismal complexity

(2010) Yun Jiang et al.   Biology Direct

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

(2009) Stefan Kurtz et al.   BMC GENOMICS

Genomic DNA k-mer spectra: models and modalities

(2009) Benny Chor et al.   GENOME BIOLOGY