Chromatin capture links the metabolic enzyme AHCY to stem cell proliferation

Formation of Chromatin Subcompartments by Phase Separation

(2018) Fabian Erdel et al.   BIOPHYSICAL JOURNAL

Regulation of chromatin and gene expression by metabolic enzymes and metabolites

(2018) Xinjian Li et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Knock-down of AHCY and depletion of adenosine induces DNA damage and cell cycle arrest

(2018) Lucija Belužić et al.   Scientific Reports

Nucleus-Translocated ACSS2 Promotes Gene Transcription for Lysosomal Biogenesis and Autophagy

(2017) Xinjian Li et al.   MOLECULAR CELL

Acetyl-CoA synthetase regulates histone acetylation and hippocampal memory

(2017) Philipp Mews et al.   NATURE

Ensembl 2018

(2017) Daniel R Zerbino et al.   NUCLEIC ACIDS RESEARCH

Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse

(2017) Cynthia L Smith et al.   NUCLEIC ACIDS RESEARCH

The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery

(2016) Hendrik G. Stunnenberg et al.   CELL

Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes

(2016) Michael Wierer et al.   HUMAN MOLECULAR GENETICS

Data on the distribution of cancer incidence and death across age and sex groups visualized using multilevel spie charts

(2016) Dror G. Feitelson   JOURNAL OF CLINICAL EPIDEMIOLOGY

EPOP Functionally Links Elongin and Polycomb in Pluripotent Stem Cells

(2016) Malte Beringer et al.   MOLECULAR CELL

Expanding the Circuitry of Pluripotency by Selective Isolation of Chromatin-Associated Proteins

(2016) Mahmoud-Reza Rafiee et al.   MOLECULAR CELL

OUP accepted manuscript

(2016)   NUCLEIC ACIDS RESEARCH

2016 update of the PRIDE database and its related tools

(2016) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Enrichr: a comprehensive gene set enrichment analysis web server 2016 update

(2016) Maxim V. Kuleshov et al.   NUCLEIC ACIDS RESEARCH

The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible

(2016) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Metabolic Enzymes Moonlighting in the Nucleus: Metabolic Regulation of Gene Transcription

(2016) Aristeidis E. Boukouris et al.   TRENDS IN BIOCHEMICAL SCIENCES

A short G1 phase imposes constitutive replication stress and fork remodelling in mouse embryonic stem cells

(2016) Akshay K. Ahuja et al.   Nature Communications

A draft map of the mouse pluripotent stem cell spatial proteome

(2016) Andy Christoforou et al.   Nature Communications

Presenting the Epigenome Roadmap

(2015) Magdalena Skipper et al.   NATURE

The histone chaperone CAF-1 safeguards somatic cell identity

(2015) Sihem Cheloufi et al.   NATURE

Chromatin proteomic profiling reveals novel proteins associated with histone-marked genomic regions

(2015) Xiong Ji et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural insights into the reaction mechanism of S-adenosyl-L-homocysteine hydrolase

(2015) Yoshio Kusakabe et al.   Scientific Reports

hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells

(2015) Peter J. Thompson et al.   PLoS Genetics

Mammalian SWI/SNF chromatin remodeling complexes and cancer: Mechanistic insights gained from human genomics

(2015) C. Kadoch et al.   Science Advances

Regulation of gene transcription by Polycomb proteins

(2015) S. Aranda et al.   Science Advances

Identification and Pharmacological Inactivation of the MYCN Gene Network as a Therapeutic Strategy for Neuroblastic Tumor Cells

(2014) Olesya Chayka et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Identification of a large protein network involved in epigenetic transmission in replicating DNA of embryonic stem cells

(2014) Sergi Aranda et al.   NUCLEIC ACIDS RESEARCH

Single-Cell RNA-Seq Reveals Dynamic, Random Monoallelic Gene Expression in Mammalian Cells

(2014) Q. Deng et al.   SCIENCE

A global assessment of cancer genomic alterations in epigenetic mechanisms

(2014) Muhammad A Shah et al.   Epigenetics & Chromatin

Visualization of the joining of ribosomal subunits reveals the presence of 80S ribosomes in the nucleus

(2013) K. Al-Jubran et al.   RNA

A Proteomic Characterization of Factors Enriched at Nascent DNA Molecules

(2013) Andres J. Lopez-Contreras et al.   Cell Reports

The mutational landscape of chromatin regulatory factors across 4,623 tumor samples

(2013) Abel Gonzalez-Perez et al.   GENOME BIOLOGY

S-adenosyl-L-homocysteine hydrolase and methylation disorders: Yeast as a model system

(2012) Oksana Tehlivets et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

5-Ethynyl-2′-deoxycytidine as a new agent for DNA labeling: Detection of proliferating cells

(2011) Dezhong Qu et al.   ANALYTICAL BIOCHEMISTRY

Chromatin Connections to Pluripotency and Cellular Reprogramming

(2011) Stuart H. Orkin et al.   CELL

Analysis of protein dynamics at active, stalled, and collapsed replication forks

(2011) B. M. Sirbu et al.   GENES & DEVELOPMENT

Dynamic metabolic labeling of DNA in vivo with arabinosyl nucleosides

(2011) A. B. Neef et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA mediated chromatin pull-down for the study of chromatin replication

(2011) Anna E. Kliszczak et al.   Scientific Reports

Improving RNA-Seq expression estimates by correcting for fragment bias

(2011) Adam Roberts et al.   GENOME BIOLOGY

A Myc Network Accounts for Similarities between Embryonic Stem and Cancer Cell Transcription Programs

(2010) Jonghwan Kim et al.   CELL

SAINT: probabilistic scoring of affinity purification–mass spectrometry data

(2010) Hyungwon Choi et al.   NATURE METHODS

The minotaur proteome: Avoiding cross-species identifications deriving from bovine serum in cell culture models

(2010) Jakob Bunkenborg et al.   PROTEOMICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Cell type specific applicability of 5-ethynyl-2′-deoxyuridine (EdU) for dynamic proliferation assessment in flow cytometry

(2009) Simone Diermeier-Daucher et al.   CYTOMETRY PART A

Inherited disorders in the conversion of methionine to homocysteine

(2009) Ivo Barić   JOURNAL OF INHERITED METABOLIC DISEASE

S-Adenosyl Homocysteine Hydrolase Is Required for Myc-Induced mRNA Cap Methylation, Protein Synthesis, and Cell Proliferation

(2009) M. E. Fernandez-Sanchez et al.   MOLECULAR AND CELLULAR BIOLOGY

Universal sample preparation method for proteome analysis

(2009) Jacek R Wiśniewski et al.   NATURE METHODS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

S-adenosylhomocysteine hydrolase downregulation contributes to tumorigenesis

(2008) J.F. Leal et al.   CARCINOGENESIS

Sprouty2-Mediated Inhibition of Fibroblast Growth Factor Signaling Is Modulated by the Protein Kinase DYRK1A

(2008) S. Aranda et al.   MOLECULAR AND CELLULAR BIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY