Intron-encoded ribosomal proteins and N-acetyltransferases within the mitochondrial genomes of fungi: here today, gone tomorrow?

Mt- rps 3 is an ancient gene which provides insight into the evolution of fungal mitochondrial genomes

(2018) Artemis G. Korovesi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparison of the Mitochondrial Genome Sequences of Six Annulohypoxylon stygium Isolates Suggests Short Fragment Insertions as a Potential Factor Leading to Larger Genomic Size

(2018) Youjin Deng et al.   Frontiers in Microbiology

Annotation and analysis of the mitochondrial genome of Coniothyrium glycines, causal agent of red leaf blotch of soybean, reveals an abundance of homing endonucleases

(2018) Christine L. Stone et al.   PLoS One

Zoantharian mitochondrial genomes contain unique complex group I introns and highly conserved intergenic regions

(2017) Sylvia Ighem Chi et al.   GENE

The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete

(2016) Stephen B. Goodwin et al.   Fungal Biology

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intron Derived Size Polymorphism in the Mitochondrial Genomes of Closely Related Chrysoporthe Species

(2016) Aquillah Mumo Kanzi et al.   PLoS One

Nucleic acid import into mitochondria: New insights into the translocation pathways

(2015) Frédérique Weber-Lotfi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Mitochondrial genome evolution in yeasts: an all-encompassing view

(2015) Kelle C. Freel et al.   FEMS YEAST RESEARCH

Extensive Horizontal Transfer and Homologous Recombination Generate Highly Chimeric Mitochondrial Genomes in Yeast

(2015) Baojun Wu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mosaic nature of the mitochondrial proteome: Implications for the origin and evolution of mitochondria

(2015) Michael W. Gray   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High Variability of Mitochondrial Gene Order among Fungi

(2014) Gabriela Aguileta et al.   Genome Biology and Evolution

The complete mitochondrial genome ofAcanthastrea maxima(Cnidaria, Scleractinia, Lobophylliidae)

(2014) Roberto Arrigoni et al.   Mitochondrial DNA

Sea anemones possess dynamic mitogenome structures

(2014) Åse Emblem et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

The 203 kbp Mitochondrial Genome of the Phytopathogenic Fungus Sclerotinia borealis Reveals Multiple Invasions of Introns and Genomic Duplications

(2014) Andrey V. Mardanov et al.   PLoS One

Horizontal Transfer and Gene Conversion as an Important Driving Force in Shaping the Landscape of Mitochondrial Introns

(2014) Baojun Wu et al.   G3-Genes Genomes Genetics

Evolutionary dynamics of introns and their open reading frames in the U7 region of the mitochondrial rnl gene in species of Ceratocystis

(2013) Jyothi Sethuraman et al.   Fungal Biology

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome portal of the Department of Energy Joint Genome Institute: 2014 updates

(2013) Henrik Nordberg et al.   NUCLEIC ACIDS RESEARCH

Thermostable group II intron reverse transcriptase fusion proteins and their use in cDNA synthesis and next-generation RNA sequencing

(2013) S. Mohr et al.   RNA

Mitochondrial Genome Evolution in a Single Protoploid Yeast Species

(2013) Paul P. Jung et al.   G3-Genes Genomes Genetics

Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex

(2012) Angelo Duò et al.   BMC GENOMICS

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

(2012) Vinita Joardar et al.   BMC GENOMICS

The mitochondrial genome of the white-rot fungus Flammulina velutipes

(2012) Hyeokjun Yoon et al.   JOURNAL OF GENERAL AND APPLIED MICROBIOLOGY

Targeting nucleic acids into mitochondria: Progress and prospects

(2012) Adnan Khan Niazi et al.   MITOCHONDRION

Frequent Gain and Loss of Introns in Fungal Cytochrome b Genes

(2012) Liang-Fen Yin et al.   PLoS One

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

A unique horizontal gene transfer event has provided the octocoral mitochondrial genome with an active mismatch repair gene that has potential for an unusual self-contained function

(2011) Jaret P Bilewitch et al.   BMC EVOLUTIONARY BIOLOGY

Complete sequence and analysis of the mitochondrial genome of the methylotrophic yeast Hansenula polymorpha DL-1

(2011) Mikhail A. Eldarov et al.   FEMS YEAST RESEARCH

Mitogenome rearrangement in the cold-water scleractinian coral Lophelia pertusa (Cnidaria, Anthozoa) involves a long-term evolving group I intron

(2011) Åse Emblem et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Phylogenetic lineages in the Capnodiales

(2010) P.W. Crous et al.   STUDIES IN MYCOLOGY

Mitochondrial inheritance in budding yeasts: towards an integrated understanding

(2010) Lisa Solieri   TRENDS IN MICROBIOLOGY

Molecular Poltergeists: Mitochondrial DNA Copies (numts) in Sequenced Nuclear Genomes

(2010) Einat Hazkani-Covo et al.   PLoS Genetics

The complete mitochondrial genome of the yeastPichia sorbitophila

(2009) Paul P. Jung et al.   FEMS YEAST RESEARCH

Molecular Evolution of the mtDNA Encoded rps3 Gene Among Filamentous Ascomycetes Fungi with an Emphasis on the Ophiostomatoid Fungi

(2009) Jyothi Sethuraman et al.   JOURNAL OF MOLECULAR EVOLUTION

Genes within Genes: Multiple LAGLIDADG Homing Endonucleases Target the Ribosomal Protein S3 Gene Encoded within an rnl Group I Intron of Ophiostoma and Related Taxa

(2009) J. Sethuraman et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fungi evolved right on track

(2009) Robert Lücking et al.   MYCOLOGIA

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

(2009) T. Arnesen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

(2009) Conrad L. Schoch et al.   SYSTEMATIC BIOLOGY

Crystal structure of RimI fromSalmonella typhimurium LT2, the GNAT responsible for Nα-acetylation of ribosomal protein S18

(2008) Matthew W. Vetting et al.   PROTEIN SCIENCE