An integrated meta-omics approach reveals substrates involved in synergistic interactions in a bisphenol A (BPA)-degrading microbial community

Mixed consortia in bioprocesses: role of microbial interactions

(2016) Shiladitya Ghosh et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fate of Bisphenol A in Terrestrial and Aquatic Environments

(2016) Jeongdae Im et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Efficient Metabolic Exchange and Electron Transfer within a Syntrophic Trichloroethene-Degrading Coculture of Dehalococcoides mccartyi 195 and Syntrophomonas wolfei

(2015) Xinwei Mao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Global Assessment of Bisphenol A in the Environment

(2015) Jone Corrales et al.   Dose-Response

Identification of Putative Genes Involved in Bisphenol A Degradation Using Differential Protein Abundance Analysis of Sphingobium sp. BiD32

(2015) Nicolette A. Zhou et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

(2015) Donovan H. Parks et al.   GENOME RESEARCH

Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes

(2015) Jenni Hultman et al.   NATURE

Kinetics modeling predicts bioaugmentation with Sphingomonad cultures as a viable technology for enhanced pharmaceutical and personal care products removal during wastewater treatment

(2014) Nicolette A. Zhou et al.   BIORESOURCE TECHNOLOGY

Genome Reconstruction and Gene Expression of “Candidatus Accumulibacter phosphatis” Clade IB Performing Biological Phosphorus Removal

(2014) Yanping Mao et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bisphenol A – Sources, toxicity and biotransformation

(2014) Jaromir Michałowicz   ENVIRONMENTAL TOXICOLOGY AND PHARMACOLOGY

Incomplete Wood-Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi

(2014) W.-Q. Zhuang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage

(2014) Emilie E. L. Muller et al.   Nature Communications

Bacteria-mediated bisphenol A degradation

(2013) Weiwei Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pathview: an R/Bioconductor package for pathway-based data integration and visualization

(2013) Weijun Luo et al.   BIOINFORMATICS

Bisphenol-A (BPA), BPA Glucuronide, and BPA Sulfate in Midgestation Umbilical Cord Serum in a Northern and Central California Population

(2013) Roy R. Gerona et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

(2013) Mads Albertsen et al.   NATURE BIOTECHNOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Condensing the omics fog of microbial communities

(2013) Emilie E.L. Muller et al.   TRENDS IN MICROBIOLOGY

A novel metatranscriptomic approach to identify gene expression dynamics during extracellular electron transfer

(2013) Shun’ichi Ishii et al.   Nature Communications

Versatility in Corrinoid Salvaging and Remodeling Pathways Supports Corrinoid-Dependent Metabolism in Dehalococcoides mccartyi

(2012) Shan Yi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

Comparative metagenomics of three Dehalococcoides-containing enrichment cultures: the role of the non-dechlorinating community

(2012) Laura A Hug et al.   BMC GENOMICS

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Metagenomic analysis of a stable trichloroethene-degrading microbial community

(2012) Vanessa L Brisson et al.   ISME Journal

Bisphenol A exposure, effects, and policy: A wildlife perspective

(2012) Shelby Flint et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Microbial interactions: from networks to models

(2012) Karoline Faust et al.   NATURE REVIEWS MICROBIOLOGY

Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge

(2012) Ke Yu et al.   PLoS One

Selective Utilization of Exogenous Amino Acids by Dehalococcoides ethenogenes Strain 195 and Its Effects on Growth and Dechlorination Activity

(2011) Wei-Qin Zhuang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

(2011) Yujie Men et al.   ISME Journal

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean

(2010) Yanmei Shi et al.   ISME Journal

Isolation and Characterization of "Dehalococcoides" sp. Strain MB, Which Dechlorinates Tetrachloroethene to trans-1,2-Dichloroethene

(2009) D. Cheng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS