标题
Gene markers for exon capture and phylogenomics in ray-finned fishes
作者
关键词
-
出版物
Ecology and Evolution
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2019-03-06
DOI
10.1002/ece3.5026
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data
- (2018) Lily C. Hughes et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Complete mitochondrial genome of Odontobutis haifengensis (Perciformes, Odontobutiae): A unique rearrangement of tRNAs and additional non-coding regions identified in the genus Odontobutis
- (2017) Liqiang Zhong et al. GENOMICS
- Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences
- (2017) Shuli Song et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit
- (2017) Christopher Darrin Hulsey et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements
- (2017) S.J. Longo et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes
- (2017) Prosanta Chakrabarty et al. SYSTEMATIC BIOLOGY
- Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
- (2017) Dahiana Arcila et al. Nature Ecology & Evolution
- Phylogenomic analysis of carangimorph fishes reveals flatfish asymmetry arose in a blink of the evolutionary eye
- (2016) Richard C. Harrington et al. BMC EVOLUTIONARY BIOLOGY
- BaitFisher: A Software Package for Multispecies Target DNA Enrichment Probe Design
- (2016) Christoph Mayer et al. MOLECULAR BIOLOGY AND EVOLUTION
- Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
- (2016) Erfan Sayyari et al. MOLECULAR BIOLOGY AND EVOLUTION
- Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms
- (2016) Hao Yuan et al. Molecular Ecology Resources
- Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon capture
- (2016) Luisa C. Teasdale et al. Molecular Ecology Resources
- RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data
- (2016) Sandra L. Hoffberg et al. Molecular Ecology Resources
- An evaluation of transcriptome-based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura)
- (2016) Daniel M. Portik et al. Molecular Ecology Resources
- Replicated divergence in cichlid radiations mirrors a major vertebrate innovation
- (2016) Matthew D. McGee et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Capturing protein-coding genes across highly divergent species
- (2016) Chenhong Li et al. BIOTECHNIQUES
- ExaML version 3: a tool for phylogenomic analyses on supercomputers
- (2015) Alexey M. Kozlov et al. BIOINFORMATICS
- ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
- (2015) Siavash Mirarab et al. BIOINFORMATICS
- RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping
- (2015) O. A. Ali et al. GENETICS
- An Exon-Capture System for the Entire Class Ophiuroidea
- (2015) Andrew F. Hugall et al. MOLECULAR BIOLOGY AND EVOLUTION
- Exon capture phylogenomics: efficacy across scales of divergence
- (2015) Jason G. Bragg et al. Molecular Ecology Resources
- Genome-wide ultraconserved elements exhibit higher phylogenetic informativeness than traditional gene markers in percomorph fishes
- (2015) Princess S. Gilbert et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Rapid genome reshaping by multiple-gene loss after whole-genome duplication in teleost fish suggested by mathematical modeling
- (2015) Jun Inoue et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MarkerMiner 1.0: A New Application for Phylogenetic Marker Development Using Angiosperm Transcriptomes
- (2015) Srikar Chamala et al. Applications in Plant Sciences
- A targeted next-generation sequencing toolkit for exon-based cichlid phylogenomics
- (2014) Katriina L. Ilves et al. Molecular Ecology Resources
- Whole-genome analyses resolve early branches in the tree of life of modern birds
- (2014) E. D. Jarvis et al. SCIENCE
- Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics
- (2014) Kevin Weitemier et al. Applications in Plant Sciences
- A Target Enrichment Method for Gathering Phylogenetic Information from Hundreds of Loci: An Example from the Compositae
- (2014) Jennifer R. Mandel et al. Applications in Plant Sciences
- Decisive Data Sets in Phylogenomics: Lessons from Studies on the Phylogenetic Relationships of Primarily Wingless Insects
- (2013) Emiliano Dell’Ampio et al. MOLECULAR BIOLOGY AND EVOLUTION
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)
- (2013) Brant C. Faircloth et al. PLoS One
- Targeted Enrichment: Maximizing Orthologous Gene Comparisons across Deep Evolutionary Time
- (2013) Shannon M. Hedtke et al. PLoS One
- Phylogeny and tempo of diversification in the superradiation of spiny-rayed fishes
- (2013) T. J. Near et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
- (2012) Ke Bi et al. BMC GENOMICS
- Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics
- (2012) David W. Weisrock et al. MOLECULAR BIOLOGY AND EVOLUTION
- EvolMarkers: a database for mining exon and intron markers for evolution, ecology and conservation studies
- (2012) CHENHONG LI et al. Molecular Ecology Resources
- Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
- (2012) Brant K. Peterson et al. PLoS One
- Resolution of ray-finned fish phylogeny and timing of diversification
- (2012) T. J. Near et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Anchored Hybrid Enrichment for Massively High-Throughput Phylogenomics
- (2012) Alan R. Lemmon et al. SYSTEMATIC BIOLOGY
- Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
- (2012) Brant C. Faircloth et al. SYSTEMATIC BIOLOGY
- Exome-wide DNA capture and next generation sequencing in domestic and wild species
- (2011) Ted Cosart et al. BMC GENOMICS
- RADSeq: next-generation population genetics
- (2011) J. W. Davey et al. Briefings in Functional Genomics
- Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
- (2011) V. C. Mason et al. GENOME RESEARCH
- Applications of next-generation sequencing to phylogeography and phylogenetics
- (2011) John E. McCormack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
- (2010) Bret R. Larget et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- Resolving postglacial phylogeography using high-throughput sequencing
- (2010) K. J. Emerson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
- Multilocus Phylogenetics of a Rapid Radiation in the Genus Thomomys (Rodentia: Geomyidae)
- (2008) Natalia M. Belfiore et al. SYSTEMATIC BIOLOGY
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