4.6 Article

A comparison of deep learning and citizen science techniques for counting wildlife in aerial survey images

期刊

METHODS IN ECOLOGY AND EVOLUTION
卷 10, 期 6, 页码 779-787

出版社

WILEY
DOI: 10.1111/2041-210X.13165

关键词

citizen science; conservation; deep learning; monitoring; population ecology; surveys

类别

资金

  1. European Union Horizon 2020 [641918]
  2. James S. McDonnell Foundation

向作者/读者索取更多资源

Fast and accurate estimates of wildlife abundance are an essential component of efforts to conserve ecosystems in the face of rapid environmental change. A widely used method for estimating species abundance involves flying aerial transects, taking photographs, counting animals within the images and then inferring total population size based on a statistical estimate of species density in the region. The intermediate task of manually counting the aerial images is highly labour intensive and is often the limiting step in making a population estimate. Here, we assess the use of two novel approaches to perform this task by deploying both citizen scientists and deep learning to count aerial images of the 2015 survey of wildebeest (Connochaetes taurinus) in Serengeti National Park, Tanzania. Through the use of the online platform Zooniverse, we collected multiple non-expert counts by citizen scientists and used three different aggregation methods to obtain a single count for the survey images. We also counted the images by developing a bespoke deep learning method via the use of a convolutional neural network. The results of both approaches were then compared. After filtering of the citizen science counts, both approaches provided highly accurate total estimates. The deep learning method was far faster and appears to be a more reliable and predictable approach; however, we note that citizen science volunteers played an important role when creating training data for the algorithm. Notably, our results show that accurate, species-specific, automated counting of aerial wildlife images is now possible.

作者

我是这篇论文的作者
点击您的名字以认领此论文并将其添加到您的个人资料中。

评论

主要评分

4.6
评分不足

次要评分

新颖性
-
重要性
-
科学严谨性
-
评价这篇论文

推荐

Article Multidisciplinary Sciences

Social information use and collective foraging in a pursuit diving seabird

Julian C. Evans, Colin J. Torney, Stephen C. Votier, Sasha R. X. Dall

PLOS ONE (2019)

Article Ecology

A hierarchical machine learning framework for the analysis of large scale animal movement data

Colin J. Torney, Juan M. Morales, Dirk Husmeier

Summary: The field of movement ecology has been revolutionized by high-accuracy telemetry data and statistical techniques, but challenges remain in quantifying parameter uncertainty, intermittent location fixes, and analyzing large volumes of data. Multilevel Gaussian process models offer efficient inference for large-volume movement data sets and fitting of complex flexible models, enabling the detection of multiscale patterns and trends in movement trajectory data. Applications include inferring migration routes, quantifying significant changes, detecting activity patterns, and identifying onset of directed persistent movements.

MOVEMENT ECOLOGY (2021)

Review Biodiversity Conservation

Safeguarding human-wildlife cooperation

Jessica E. M. van der Wal, Claire N. Spottiswoode, Natalie T. Uomini, Mauricio Cantor, Fabio G. Daura-Jorge, Anap Afan, Mairenn C. Attwood, Jenny Amphaeris, Fatima Balasani, Colleen M. Begg, Cameron J. Blair, Judith L. Bronstein, Iahaia O. Buanachique, Rion R. T. Cuthill, Jewel Das, Apurba Deb, Tanmay Dixit, Gcina S. Dlamini, Edmond Dounias, Isa I. Gedi, Martin Gruber, Lilian S. Hoffmann, Tobias Holzlehner, Hussein A. Isack, Eliupendo A. Laltaika, David J. Lloyd-Jones, Jess Lund, Alexandre M. S. Machado, L. Mahadevan, Ignacio B. Moreno, Chima J. Nwaogu, Valdomiro L. Pereira, Raymond Pierotti, Seliano A. Rucunua, Wilson F. dos Santos, Nathalia Serpa, Brian D. Smith, Irina Tolkova, Tint Tun, Joao V. S. Valle-Pereira, Brian M. Wood, Richard W. Wrangham, Dominic L. Cram

Summary: Human-wildlife cooperation refers to the active coordination of behavior between humans and free-living wild animals to achieve mutual benefits. It has important impacts on both human and wildlife communities, as well as the local ecosystem, and represents a unique intersection of human and animal cultures. To safeguard this cooperation, multiple components, such as motivated human and wildlife partners, suitable environments, and compatible interspecies knowledge, need to be protected from threats posed by ecological and cultural changes. Tailored safeguarding plans should be implemented to protect these diverse and irreplaceable interactions.

CONSERVATION LETTERS (2022)

Article Ecology

Estimating the abundance of a group-living species using multi-latent spatial models

Colin J. Torney, Megan Laxton, David J. Lloyd-Jones, Edward M. Kohi, Howard L. Frederick, David C. Moyer, Chediel Mrisha, Machoke Mwita, J. Grant C. Hopcraft

Summary: Statistical models are used to infer the abundance and distribution of species, but the spatial distribution of animals is influenced by many factors. Simplifying assumptions in modeling can result in poor performance and inaccurate predictions. This study explores the impact of spatial complexity on modeling the abundance of the Serengeti wildebeest and introduces a multi-latent framework to capture the clustered distribution. Results show that simplifying assumptions can impair performance, but accurate predictions can be made by using mixtures of spatial models.

METHODS IN ECOLOGY AND EVOLUTION (2023)

Article Ecology

Inferring spatially varying animal movement characteristics using a hierarchical continuous-time velocity model

Ionut Paun, Dirk Husmeier, J. Grant C. Hopcraft, Majaliwa M. Masolele, Colin J. Torney

Summary: Understanding the spatial dynamics of animal movement is crucial for maintaining ecological connectivity and conserving key habitats. This study presents a Bayesian framework based on Gaussian processes to analyze spatial characteristics of animal movement, and demonstrates its effectiveness through synthetic data and telemetry data from the Serengeti wildebeest migration.

ECOLOGY LETTERS (2022)

Article Biology

When wax wanes: competitors for beeswax stabilize rather than jeopardize the honeyguide-human mutualism

David J. Lloyd-Jones, James J. H. St Clair, Dominic L. Cram, Orlando Yassene, Jessica E. M. van der Wal, Claire N. Spottiswoode

Summary: This study on a bird-human mutualism found that the presence of heterospecific exploiters stabilizes the mutualism by limiting the feeding opportunities for conspecific exploiters. The findings highlight the importance of ecological context in species interactions.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2022)

Article Computer Science, Theory & Methods

Stochastic variational inference for scalable non-stationary Gaussian process regression

Ionut Paun, Dirk Husmeier, Colin J. Torney

Summary: A natural extension to standard Gaussian process regression is the use of non-stationary Gaussian processes, which allows parameters of the covariance kernel to vary in time or space. However, existing methods for fitting non-stationary GPs are not scalable to large datasets due to high computational costs. In this study, we propose a variational inference approach that combines sparse GP regression methods with a trajectory segmentation technique to fit non-stationary GPs on large datasets. The effectiveness of our approach is demonstrated on both synthetic and real world datasets.

STATISTICS AND COMPUTING (2023)

Article Multidisciplinary Sciences

Inferring the interaction rules of complex systems with graph neural networks and approximate Bayesian computation

Jennifer Gaskell, Nazareno Campioni, Juan M. Morales, Dirk Husmeier, Colin J. Torney

Summary: Inferring the underlying processes that drive collective behaviour in biological and social systems is a challenging task. Approximate Bayesian computation (ABC) combined with Gaussian process acceleration and graph neural networks can effectively overcome the difficulties of designing specific summary statistics for inference, providing a more automated approach.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2023)

Article Biology

Guides and cheats: producer-scrounger dynamics in the human-honeyguide mutualism

Dominic L. Cram, David J. Lloyd-Jones, Jessica E. M. van der Wal, Jess Lund, Iahaia O. Buanachique, Musaji Muamedi, Carvalho I. Nanguar, Antonio Ngovene, Shirley Raveh, Winnie Boner, Claire N. Spottiswoode

Summary: In the mutualism between humans and greater honeyguides, the birds can flexibly switch between guiding humans to bees' nests and scavenging beeswax. The birds' traits, such as tarsi length and weight, predict their tactic decisions. This producer-scrounger system increases the productivity and resilience of the human-honeyguide mutualism.

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2023)

Article Ecology

Non-local effects of human activity on the spatial distribution of migratory wildlife in Serengeti National Park, Tanzania

Cyrus M. Kavwele, Colin J. Torney, Thomas A. Morrison, Sidney Fulford, Majaliwa M. Masolele, Joseph Masoy, J. Grant C. Hopcraft

Summary: Human activities are creating hard edges and artificial boundaries between human-dominated landscapes and natural habitats, which can influence biotic interactions and animal behaviors. This study investigates how different degrees of boundary hardness affect space utilization by migratory species in Serengeti National Park, Tanzania.

ECOLOGICAL SOLUTIONS AND EVIDENCE (2022)

Review Biodiversity Conservation

The ecology and evolution of human-wildlife cooperation

Dominic L. Cram, Jessica E. M. van der Wal, Natalie Uomini, Mauricio Cantor, Anap Afan, Mairenn C. Attwood, Jenny Amphaeris, Fatima Balasani, Cameron J. Blair, Judith L. Bronstein, Iahaia O. Buanachique, Rion R. T. Cuthill, Jewel Das, Fabio G. Daura-Jorge, Apurba Deb, Tanmay Dixit, Gcina S. Dlamini, Edmond Dounias, Isa I. Gedi, Martin Gruber, Lilian S. Hoffmann, Tobias Holzlehner, Hussein A. Isack, Eliupendo A. Laltaika, David J. Lloyd-Jones, Jess Lund, Alexandre M. S. Machado, L. Mahadevan, Ignacio B. Moreno, Chima J. Nwaogu, Raymond Pierotti, Seliano A. Rucunua, Wilson F. dos Santos, Nathalia Serpa, Brian D. Smith, Hari Sridhar, Irina Tolkova, Tint Tun, Joao V. S. Valle-Pereira, Brian M. Wood, Richard W. Wrangham, Claire N. Spottiswoode

Summary: Human-wildlife cooperation is a mutualistic relationship where humans and free-living animals actively coordinate their behavior for a common beneficial outcome. This article reviews and synthesizes the function, mechanism, development, and evolution of human-wildlife cooperation. The study identifies active cases involving cooperation with honeyguide birds and two dolphin species, as well as historical cases involving wolves and orcas. The article highlights the importance of social learning in developing the necessary skills for cooperation and emphasizes the distinct behavioral variants that have emerged in these interactions.

PEOPLE AND NATURE (2022)

Article Physics, Multidisciplinary

Inferring microscale properties of interacting systems from macroscale observations

Nazareno Campioni, Dirk Husmeier, Juan Morales, Jennifer Gaskell, Colin J. Torney

Summary: Emergent dynamics of complex systems are commonly observed in nature and society, often arising from fine-scale interactions at the individual level. However, creating models that bridge the gap between microscale and macroscale dynamics poses a challenge due to the lack of a formal mathematical link between the two scales.

PHYSICAL REVIEW RESEARCH (2021)

暂无数据