Low genetic variation is associated with low mutation rate in the giant duckweed

Extreme Lewontin’s Paradox in Ubiquitous Marine Phytoplankton Species

(2018) Dmitry A Filatov   MOLECULAR BIOLOGY AND EVOLUTION

Comprehensive definition of genome features inSpirodela polyrhizaby high-depth physical mapping and short-read DNA sequencing strategies

(2017) Todd P. Michael et al.   PLANT JOURNAL

Mutation accumulation under UV radiation in Escherichia coli

(2017) Atsushi Shibai et al.   Scientific Reports

Spontaneous Mutation Accumulation inDaphnia pulexin Selection-Free vs. Competitive Environments

(2016) Jullien M. Flynn et al.   MOLECULAR BIOLOGY AND EVOLUTION

Determinants of genetic diversity

(2016) Hans Ellegren et al.   NATURE REVIEWS GENETICS

UVR2 ensures transgenerational genome stability under simulated natural UV-B in Arabidopsis thaliana

(2016) Eva-Maria Willing et al.   Nature Communications

Genetic characterization and barcoding of taxa in the genera Landoltia and Spirodela (Lemnaceae) by three plastidic markers and amplified fragment length polymorphism (AFLP)

(2015) Manuela Bog et al.   HYDROBIOLOGIA

Combining tumor genome simulation with crowdsourcing to benchmark somatic single-nucleotide-variant detection

(2015) Adam D Ewing et al.   NATURE METHODS

Natural Selection Constrains Neutral Diversity across A Wide Range of Species

(2015) Russell B. Corbett-Detig et al.   PLOS BIOLOGY

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations

(2014) Caifu Jiang et al.   GENOME RESEARCH

Species distribution, genetic diversity and barcoding in the duckweed family (Lemnaceae)

(2014) Yaliang Xu et al.   HYDROBIOLOGIA

Estimation of the Spontaneous Mutation Rate in Heliconius melpomene

(2014) Peter D. Keightley et al.   MOLECULAR BIOLOGY AND EVOLUTION

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Climate change selects for heterozygosity in a declining fur seal population

(2014) Jaume Forcada et al.   NATURE

Comparative population genomics in animals uncovers the determinants of genetic diversity

(2014) J. Romiguier et al.   NATURE

Relativein vitrogrowth rates of duckweeds (Lemnaceae) - the most rapidly growing higher plants

(2014) P. Ziegler et al.   PLANT BIOLOGY

Protocol: a simple method for extracting next-generation sequencing quality genomic DNA from recalcitrant plant species

(2014) Adam Healey et al.   Plant Methods

The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle

(2014) W. Wang et al.   Nature Communications

Estimation of the Spontaneous Mutation Rate per Nucleotide Site in a Drosophila melanogaster Full-Sib Family

(2013) Peter D. Keightley et al.   GENETICS

Genomic signatures of selection at linked sites: unifying the disparity among species

(2013) Asher D. Cutter et al.   NATURE REVIEWS GENETICS

Temperature, stress and spontaneous mutation in Caenorhabditis briggsae and Caenorhabditis elegans

(2012) C. Matsuba et al.   Biology Letters

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Evolutionary rescue in vertebrates: evidence, applications and uncertainty

(2012) E. Vander Wal et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Drift-barrier hypothesis and mutation-rate evolution

(2012) W. Sung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Whole-genome sequencing of multiple Arabidopsis thaliana populations

(2011) Jun Cao et al.   NATURE GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The evolutionary ecology of clonally propagated domesticated plants

(2010) Doyle McKey et al.   NEW PHYTOLOGIST

Genetic hitchhiking versus background selection: the controversy and its implications

(2010) W. Stephan   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana

(2010) S. Ossowski et al.   SCIENCE

Environmental duress and epistasis: how does stress affect the strength of selection on new mutations?

(2010) Aneil F. Agrawal et al.   TRENDS IN ECOLOGY & EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS