Global In-Silico Scenario of tRNA Genes and Their Organization in Virus Genomes

Exploring tRNA gene cluster in archaea

(2019) Sergio Mascarenhas Morgado et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Tailed giant Tupanvirus possesses the most complete translational apparatus of the known virosphere

(2018) Jônatas Abrahão et al.   Nature Communications

Beyond the Limits: tRNA Array Units in Mycobacterium Genomes

(2018) Sergio M. Morgado et al.   Frontiers in Microbiology

Repertoires of tRNAs: The Couplers of Genomics and Proteomics

(2018) Roni Rak et al.   Annual Review of Cell and Developmental Biology

Functionality of tRNAs encoded in a mobile genetic element from an acidophilic bacterium

(2017) Pamela Alamos et al.   RNA Biology

Giant viruses with an expanded complement of translation system components

(2017) Frederik Schulz et al.   SCIENCE

Bacteriophage evolution differs by host, lifestyle and genome

(2017) Travis N. Mavrich et al.   Nature Microbiology

AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks

(2016) Val F. Lanza et al.   BIOINFORMATICS

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes

(2016) Todd M. Lowe et al.   NUCLEIC ACIDS RESEARCH

Pepo aphid-borne yellows virus: a new species in the genus Polerovirus

(2016) Jacques D. Ibaba et al.   VIRUS GENES

A Comprehensive tRNA Genomic Survey Unravels the Evolutionary History of tRNA Arrays in Prokaryotes

(2015) Tam T.T. Tran et al.   Genome Biology and Evolution

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

(2015) Itamar Sela et al.   NUCLEIC ACIDS RESEARCH

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Unexplained diarrhoea in HIV-1 infected individuals

(2014) Bas B Oude Munnink et al.   BMC INFECTIOUS DISEASES

Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of Occidozyga martensii

(2014) EN LI et al.   JOURNAL OF GENETICS

Differential Codon Adaptation between dsDNA and ssDNA Phages in Escherichia coli

(2014) Shivapriya Chithambaram et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of Newly Isolated Lytic Bacteriophages Active against Acinetobacter baumannii

(2014) Maia Merabishvili et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

tRNADB-CE: tRNA gene database well-timed in the era of big sequence data

(2014) Takashi Abe et al.   Frontiers in Genetics

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

(2013) Bruno Contreras-Moreira et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Codon Usage, Amino Acid Usage, Transfer RNA and Amino-Acyl-tRNA Synthetases in Mimiviruses

(2013) Philippe Colson et al.   INTERVIROLOGY

Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Repertoires of tRNA Isotypes

(2013) W. H. Pope et al.   JOURNAL OF VIROLOGY

Snapshot of haloarchaeal tailed virus genomes

(2013) Ana Senčilo et al.   RNA Biology

Genome sequence and analysis of a broad-host range lytic bacteriophage that infects the Bacillus cereus group

(2013) Tarek F El-Arabi et al.   Virology Journal

Expression and processing of an unusual tRNA gene cluster in the cyanobacteriumAnabaenasp. PCC 7120

(2012) Leonor Puerto-Galán et al.   FEMS MICROBIOLOGY LETTERS

A Multivalent Adsorption Apparatus Explains the Broad Host Range of Phage phi92: a Comprehensive Genomic and Structural Analysis

(2012) D. Schwarzer et al.   JOURNAL OF VIROLOGY

Comparative Mitochondrial Genomics within and among Yeast Species of the Lachancea Genus

(2012) Anne Friedrich et al.   PLoS One

Genomic and Proteomic Characterization of the Broad-Host-Range Salmonella Phage PVP-SE1: Creation of a New Phage Genus

(2011) S. B. Santos et al.   JOURNAL OF VIROLOGY

Complete genome sequence and characterization of a broad-host range T4-like bacteriophage phiAS5 infecting Aeromonas salmonicida subsp. salmonicida

(2011) Ji Hyung Kim et al.   VETERINARY MICROBIOLOGY

Genomic organization of eukaryotic tRNAs

(2010) Clara Bermudez-Santana et al.   BMC GENOMICS

Complete mitochondrial genome sequence of the yeast Pichia farinosa and comparative analysis of closely related species

(2010) Paul P. Jung et al.   CURRENT GENETICS

Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size

(2010) Graham F. Hatfull et al.   JOURNAL OF MOLECULAR BIOLOGY

Giant virus with a remarkable complement of genes infects marine zooplankton

(2010) M. G. Fischer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Viral tRNAs and tRNA-like structures

(2010) Theo W. Dreher   Wiley Interdisciplinary Reviews-RNA

Complete Genome of the Broad-Host-Range Erwinia amylovora Phage  Ea21-4 and Its Relationship to Salmonella Phage Felix O1

(2009) S. M. Lehman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences

(2009) Iris Bahir et al.   Molecular Systems Biology

Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage

(2008) V. S. Brok-Volchanskaya et al.   NUCLEIC ACIDS RESEARCH