Multicolor localization microscopy and point-spread-function engineering by deep learning

Simultaneous Multicolor Single-Molecule Tracking with Single-Laser Excitation via Spectral Imaging

(2018) Tao Huang et al.   BIOPHYSICAL JOURNAL

Deep learning massively accelerates super-resolution localization microscopy

(2018) Wei Ouyang et al.   NATURE BIOTECHNOLOGY

Learned phase coded aperture for the benefit of depth of field extension

(2018) Shay Elmalem et al.   OPTICS EXPRESS

High precision wavefront control in point spread function engineering for single emitter localization

(2018) M. Siemons et al.   OPTICS EXPRESS

Deep-STORM: super-resolution single-molecule microscopy by deep learning

(2018) Elias Nehme et al.   Optica

Analyzing complex single-molecule emission patterns with deep learning

(2018) Peiyi Zhang et al.   NATURE METHODS

Measurement-based estimation of global pupil functions in 3D localization microscopy

(2017) Petar N. Petrov et al.   OPTICS EXPRESS

TestSTORM: Versatile simulator software for multimodal super-resolution localization fluorescence microscopy

(2017) Tibor Novák et al.   Scientific Reports

Deep learning microscopy

(2017) Yair Rivenson et al.   Optica

Photometry unlocks 3D information from 2D localization microscopy data

(2016) Christian Franke et al.   NATURE METHODS

Multicolour localization microscopy by point-spread-function engineering

(2016) Yoav Shechtman et al.   Nature Photonics

Simultaneous measurement of emission color and 3D position of single molecules

(2016) Carlas Smith et al.   OPTICS EXPRESS

Colored point spread function engineering for parallel confocal microscopy

(2016) Alexander Jesacher et al.   OPTICS EXPRESS

Precise Three-Dimensional Scan-Free Multiple-Particle Tracking over Large Axial Ranges with Tetrapod Point Spread Functions

(2015) Yoav Shechtman et al.   NANO LETTERS

Deep learning

(2015) Yann LeCun et al.   NATURE

Direct optical nanoscopy with axially localized detection

(2015) N. Bourg et al.   Nature Photonics

Application of CRISPR/Cas9 for biomedical discoveries

(2015) Sean M. Riordan et al.   Cell and Bioscience

Correcting field-dependent aberrations with nanoscale accuracy in three-dimensional single-molecule localization microscopy

(2015) Alex von Diezmann et al.   Optica

ThunderSTORM: a comprehensive ImageJ plug-in for PALM and STORM data analysis and super-resolution imaging

(2014) Martin Ovesný et al.   BIOINFORMATICS

Extending Single-Molecule Microscopy Using Optical Fourier Processing

(2014) Adam S. Backer et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Optimal Point Spread Function Design for 3D Imaging

(2014) Yoav Shechtman et al.   PHYSICAL REVIEW LETTERS

FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data

(2014) Junhong Min et al.   Scientific Reports

Top-Hat and Asymmetric Gaussian-Based Fitting Functions for Quantifying Directional Single-Molecule Motion

(2013) David J. Rowland et al.   CHEMPHYSCHEM

Faster STORM using compressed sensing

(2012) Lei Zhu et al.   NATURE METHODS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

DAOSTORM: an algorithm for high- density super-resolution microscopy

(2011) Seamus J Holden et al.   NATURE METHODS

Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging

(2011) Graham T Dempsey et al.   NATURE METHODS

Simultaneous multiple-emitter fitting for single molecule super-resolution imaging

(2011) Fang Huang et al.   Biomedical Optics Express

Fast, background-free, 3D super-resolution optical fluctuation imaging (SOFI)

(2009) T. Dertinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fluorescence nanoscopy by ground-state depletion and single-molecule return

(2008) Jonas Fölling et al.   NATURE METHODS