Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1
出版年份 2019 全文链接
标题
Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1
作者
关键词
-
出版物
NATURE NEUROSCIENCE
Volume 22, Issue 3, Pages 362-373
出版商
Springer Nature
发表日期
2019-02-05
DOI
10.1038/s41593-018-0328-5
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Delayed Accumulation of H3K27me3 on Nascent DNA Is Essential for Recruitment of Transcription Factors at Early Stages of Stem Cell Differentiation
- (2017) Svetlana Petruk et al. MOLECULAR CELL
- A UTX-MLL4-p300 Transcriptional Regulatory Network Coordinately Shapes Active Enhancer Landscapes for Eliciting Transcription
- (2017) Shu-Ping Wang et al. MOLECULAR CELL
- Physiological functions of programmed DNA breaks in signal-induced transcription
- (2017) Janusz Puc et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis
- (2017) Issam Aldiri et al. NEURON
- UTX-guided neural crest function underlies craniofacial features of Kabuki syndrome
- (2017) Karl B. Shpargel et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Long Neural Genes Harbor Recurrent DNA Break Clusters in Neural Stem/Progenitor Cells
- (2016) Pei-Chi Wei et al. CELL
- 53BP1 Integrates DNA Repair and p53-Dependent Cell Fate Decisions via Distinct Mechanisms
- (2016) Raquel Cuella-Martin et al. MOLECULAR CELL
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
- (2016) Maxim V. Kuleshov et al. NUCLEIC ACIDS RESEARCH
- Transcription-associated processes cause DNA double-strand breaks and translocations in neural stem/progenitor cells
- (2016) Bjoern Schwer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Activity-Induced DNA Breaks Govern the Expression of Neuronal Early-Response Genes
- (2015) Ram Madabhushi et al. CELL
- limma powers differential expression analyses for RNA-sequencing and microarray studies
- (2015) Matthew E. Ritchie et al. NUCLEIC ACIDS RESEARCH
- Transcriptional elongation requires DNA break-induced signalling
- (2015) Heeyoun Bunch et al. Nature Communications
- The Molecular Signatures Database Hallmark Gene Set Collection
- (2015) Arthur Liberzon et al. Cell Systems
- HTSeq--a Python framework to work with high-throughput sequencing data
- (2014) S. Anders et al. BIOINFORMATICS
- JUMP: A Tag-based Database Search Tool for Peptide Identification with High Sensitivity and Accuracy
- (2014) Xusheng Wang et al. MOLECULAR & CELLULAR PROTEOMICS
- Transcriptional landscape of the prenatal human brain
- (2014) Jeremy A. Miller et al. NATURE
- Generation of cerebral organoids from human pluripotent stem cells
- (2014) Madeline A Lancaster et al. Nature Protocols
- Activation of Neuronal Gene Expression by the JMJD3 Demethylase Is Required for Postnatal and Adult Brain Neurogenesis
- (2014) Dae Hwi Park et al. Cell Reports
- voom: precision weights unlock linear model analysis tools for RNA-seq read counts
- (2014) Charity W Law et al. GENOME BIOLOGY
- DNA targeting specificity of RNA-guided Cas9 nucleases
- (2013) Patrick D Hsu et al. NATURE BIOTECHNOLOGY
- Double-strand break repair: 53BP1 comes into focus
- (2013) Stephanie Panier et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Neural Stem Cells: Generating and Regenerating the Brain
- (2013) Fred H. Gage et al. NEURON
- Self-organization of axial polarity, inside-out layer pattern, and species-specific progenitor dynamics in human ES cell-derived neocortex
- (2013) T. Kadoshima et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The sva package for removing batch effects and other unwanted variation in high-throughput experiments
- (2012) Jeffrey T. Leek et al. BIOINFORMATICS
- ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
- (2012) S. G. Landt et al. GENOME RESEARCH
- GENCODE: The reference human genome annotation for The ENCODE Project
- (2012) J. Harrow et al. GENOME RESEARCH
- Histone Demethylase UTX and Chromatin Remodeler BRM Bind Directly to CBP and Modulate Acetylation of Histone H3 Lysine 27
- (2012) F. Tie et al. MOLECULAR AND CELLULAR BIOLOGY
- The Pediatric Cancer Genome Project
- (2012) James R Downing et al. NATURE GENETICS
- UTX regulates mesoderm differentiation of embryonic stem cells independent of H3K27 demethylase activity
- (2012) C. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- X-linked H3K27me3 demethylase Utx is required for embryonic development in a sex-specific manner
- (2012) G. G. Welstead et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global identification of MLL2-targeted loci reveals MLL2's role in diverse signaling pathways
- (2012) C. Guo et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity
- (2012) M. Jinek et al. SCIENCE
- The C. elegans H3K27 Demethylase UTX-1 Is Essential for Normal Development, Independent of Its Enzymatic Activity
- (2012) Julien Vandamme et al. PLoS Genetics
- Integrative genomics viewer
- (2011) James T Robinson et al. NATURE BIOTECHNOLOGY
- Jmjd3 and UTX Play a Demethylase-Independent Role in Chromatin Remodeling to Regulate T-Box Family Member-Dependent Gene Expression
- (2010) Sara A. Miller et al. MOLECULAR CELL
- A scaling normalization method for differential expression analysis of RNA-seq data
- (2010) Mark D Robinson et al. GENOME BIOLOGY
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- Identifying Positioned Nucleosomes with Epigenetic Marks in Human from ChIP-Seq
- (2008) Yong Zhang et al. BMC GENOMICS
- Design and analysis of ChIP-seq experiments for DNA-binding proteins
- (2008) Peter V Kharchenko et al. NATURE BIOTECHNOLOGY
- The Histone H3 Lysine 27-Specific Demethylase Jmjd3 Is Required for Neural Commitment
- (2008) Thomas Burgold et al. PLoS One
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