FOXK1 and FOXK2 regulate aerobic glycolysis

mTORC1 Promotes Metabolic Reprogramming by the Suppression of GSK3-Dependent Foxk1 Phosphorylation

(2018) Long He et al.   MOLECULAR CELL

Nutrient acquisition strategies of mammalian cells

(2017) Wilhelm Palm et al.   NATURE

Glucose feeds the TCA cycle via circulating lactate

(2017) Sheng Hui et al.   NATURE

GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

(2016) Santhilal Subhash et al.   BMC BIOINFORMATICS

Lysine-specific demethylase 1 promotes brown adipose tissue thermogenesis via repressing glucocorticoid activation

(2016) Xing Zeng et al.   GENES & DEVELOPMENT

Determining Maximum Glycolytic Capacity Using Extracellular Flux Measurements

(2016) Shona A. Mookerjee et al.   PLoS One

A Creatine-Driven Substrate Cycle Enhances Energy Expenditure and Thermogenesis in Beige Fat

(2015) Lawrence Kazak et al.   CELL

Unpredicted phenotypes of two mutants of the TcR DMF5

(2015) Fitsum G. Tadesse et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Thermogenic Activity of UCP1 in Human White Fat-Derived Beige Adipocytes

(2015) Stefano Bartesaghi et al.   MOLECULAR ENDOCRINOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

The pivotal role of pyruvate dehydrogenase kinases in metabolic flexibility

(2014) Shuai Zhang et al.   Nutrition & Metabolism

Metabolic Reprogramming towards Aerobic Glycolysis Correlates with Greater Proliferative Ability and Resistance to Metabolic Inhibition in CD8 versus CD4 T Cells

(2014) Yilin Cao et al.   PLoS One

Rapid Analysis of Glycolytic and Oxidative Substrate Flux of Cancer Cells in a Microplate

(2014) Lisa S. Pike Winer et al.   PLoS One

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Mutations inSDHDlead to autosomal recessive encephalomyopathy and isolated mitochondrial complex II deficiency

(2013) Christopher Benjamin Jackson et al.   JOURNAL OF MEDICAL GENETICS

oPOSSUM-3: Advanced Analysis of Regulatory Motif Over-Representation Across Genes or ChIP-Seq Datasets

(2013) Andrew T. Kwon et al.   G3-Genes Genomes Genetics

Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA

(2011) Atanas Kamburov et al.   BIOINFORMATICS

T Cell-Signaling Network Analysis Reveals Distinct Differences between CD28 and CD2 Costimulation Responses in Various Subsets and in the MAPK Pathway between Resting and Activated Regulatory T Cells

(2011) Maria Elisabeth Kalland et al.   JOURNAL OF IMMUNOLOGY

SAMStat: monitoring biases in next generation sequencing data

(2010) T. Lassmann et al.   BIOINFORMATICS

Evidence against a sexual dimorphism in glucose and fatty acid metabolism in skeletal muscle cultures from age-matched men and post-menopausal women

(2009) A. Rune et al.   Acta Physiologica

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Cell-cell and intracellular lactate shuttles

(2009) George A. Brooks   JOURNAL OF PHYSIOLOGY-LONDON

Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation

(2009) M. G. Vander Heiden et al.   SCIENCE

In vitro differentiated adipocytes from a Foxc2 reporter knock-in mouse as screening tool

(2009) Anna Cederberg et al.   TRANSGENIC RESEARCH

Differential metabolic consequences of fumarate hydratase and respiratory chain defects

(2008) Nuno Raimundo et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Electron Transfer Dissociation of iTRAQ Labeled Peptide Ions

(2008) Hongling Han et al.   JOURNAL OF PROTEOME RESEARCH

Kcnq1ot1 Antisense Noncoding RNA Mediates Lineage-Specific Transcriptional Silencing through Chromatin-Level Regulation

(2008) Radha Raman Pandey et al.   MOLECULAR CELL