Application of high-throughput 16S rRNA sequencing to identify fecal contamination sources and to complement the detection of fecal indicator bacteria in rural groundwater

Shotgun metagenomic sequencing reveals freshwater beach sands as reservoir of bacterial pathogens

(2017) Mahi M. Mohiuddin et al.   WATER RESEARCH

Differential occurrence of Escherichia coli and human Bacteroidales at two Great Lakes beaches

(2015) Zachery R. Staley et al.   JOURNAL OF GREAT LAKES RESEARCH

Distribution and abundance of human-specificBacteroidesand relation to traditional indicators in an urban tropical catchment

(2014) J. P. Nshimyimana et al.   JOURNAL OF APPLIED MICROBIOLOGY

Sewage reflects the distribution of human faecalLachnospiraceae

(2013) Sandra L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial water quality in freshwater lakes with different land use

(2013) Z.R. Staley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evaluation of molecular community analysis methods for discerning fecal sources and human waste

(2013) Yiping Cao et al.   WATER RESEARCH

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Status of the phylogenetic diversity census of ruminal microbiomes

(2011) Minseok Kim et al.   FEMS MICROBIOLOGY ECOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Use of Barcoded Pyrosequencing and Shared OTUs To Determine Sources of Fecal Bacteria in Watersheds

(2010) Tatsuya Unno et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Microbial Diversity of Septic Tank Effluent and a Soil Biomat

(2009) J. Tomaras et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY