标题
Dynamics of transcriptional enhancers and chromosome topology in gene regulation
作者
关键词
-
出版物
DEVELOPMENT GROWTH & DIFFERENTIATION
Volume -, Issue -, Pages -
出版商
Wiley
发表日期
2019-02-20
DOI
10.1111/dgd.12597
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Visualization of Transvection in Living Drosophila Embryos
- (2018) Bomyi Lim et al. MOLECULAR CELL
- Functional Domains of NEAT1 Architectural lncRNA Induce Paraspeckle Assembly through Phase Separation
- (2018) Tomohiro Yamazaki et al. MOLECULAR CELL
- Enhancer hubs and loop collisions identified from single-allele topologies
- (2018) Amin Allahyar et al. NATURE GENETICS
- Imaging dynamic and selective low-complexity domain interactions that control gene transcription
- (2018) Shasha Chong et al. SCIENCE
- Coactivator condensation at super-enhancers links phase separation and gene control
- (2018) Benjamin R. Sabari et al. SCIENCE
- Mediator and RNA polymerase II clusters associate in transcription-dependent condensates
- (2018) Won-Ki Cho et al. SCIENCE
- Real-time imaging of DNA loop extrusion by condensin
- (2018) Mahipal Ganji et al. SCIENCE
- The Energetics and Physiological Impact of Cohesin Extrusion
- (2018) Laura Vian et al. CELL
- Disease-Associated Short Tandem Repeats Co-localize with Chromatin Domain Boundaries
- (2018) James H. Sun et al. CELL
- Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II
- (2018) Huasong Lu et al. NATURE
- Dynamic interplay between enhancer–promoter topology and gene activity
- (2018) Hongtao Chen et al. NATURE GENETICS
- RNA polymerase II clustering through carboxy-terminal domain phase separation
- (2018) Marc Boehning et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains
- (2018) Ann Boija et al. CELL
- Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome
- (2018) Yongdae Shin et al. CELL
- Genomic encoding of transcriptional burst kinetics
- (2018) Anton J. M. Larsson et al. NATURE
- Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells
- (2018) Bogdan Bintu et al. SCIENCE
- Temporal control of gene expression by the pioneer factor Zelda through transient interactions in hubs
- (2018) Jeremy Dufourt et al. Nature Communications
- Dense Bicoid hubs accentuate binding along the morphogen gradient
- (2017) Mustafa Mir et al. GENES & DEVELOPMENT
- Phase separation drives heterochromatin domain formation
- (2017) Amy R. Strom et al. NATURE
- Complex multi-enhancer contacts captured by genome architecture mapping
- (2017) Robert A. Beagrie et al. NATURE
- Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
- (2017) Adam G. Larson et al. NATURE
- Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl
- (2017) Georg A. Busslinger et al. NATURE
- Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition
- (2017) Ilya M. Flyamer et al. NATURE
- 3D structures of individual mammalian genomes studied by single-cell Hi-C
- (2017) Tim J. Stevens et al. NATURE
- Cell-cycle dynamics of chromosomal organization at single-cell resolution
- (2017) Takashi Nagano et al. NATURE
- The condensin complex is a mechanochemical motor that translocates along DNA
- (2017) Tsuyoshi Terakawa et al. SCIENCE
- Nuclear microenvironments modulate transcription from low-affinity enhancers
- (2017) Albert Tsai et al. eLife
- Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus
- (2016) Emily M. Smith et al. AMERICAN JOURNAL OF HUMAN GENETICS
- Enhancer Control of Transcriptional Bursting
- (2016) Takashi Fukaya et al. CELL
- Coexisting Liquid Phases Underlie Nucleolar Subcompartments
- (2016) Marina Feric et al. CELL
- Shhand ZRS enhancer colocalisation is specific to the zone of polarising activity
- (2016) Iain Williamson et al. DEVELOPMENT
- The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
- (2016) Orsolya Symmons et al. DEVELOPMENTAL CELL
- Rapid movement and transcriptional re‐localization of human cohesin on DNA
- (2016) Iain F Davidson et al. EMBO JOURNAL
- Enhancer Regulation of Transcriptional Bursting Parameters Revealed by Forced Chromatin Looping
- (2016) Caroline R. Bartman et al. MOLECULAR CELL
- Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture
- (2016) Caelin Cubeñas-Potts et al. NUCLEIC ACIDS RESEARCH
- Activation of proto-oncogenes by disruption of chromosome neighborhoods
- (2016) D. Hnisz et al. SCIENCE
- Rapid Protein Depletion in Human Cells by Auxin-Inducible Degron Tagging with Short Homology Donors
- (2016) Toyoaki Natsume et al. Cell Reports
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- Investigating the Interplay between Sister Chromatid Cohesion and Homolog Pairing in Drosophila Nuclei
- (2016) T. Niroshini Senaratne et al. PLoS Genetics
- Determinants of Chromosome Architecture: Insulator Pairing in cis and in trans
- (2016) Miki Fujioka et al. PLoS Genetics
- RNA Polymerase II cluster dynamics predict mRNA output in living cells
- (2016) Won-Ki Cho et al. eLife
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- (2015) Darío G. Lupiáñez et al. CELL
- CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function
- (2015) Ya Guo et al. CELL
- Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization
- (2015) Amandine Molliex et al. CELL
- Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains
- (2015) Sergey V. Ulianov et al. GENOME RESEARCH
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Genome-scale functional characterization of Drosophila developmental enhancers in vivo
- (2014) Evgeny Z. Kvon et al. NATURE
- CTCF: an architectural protein bridging genome topology and function
- (2014) Chin-Tong Ong et al. NATURE REVIEWS GENETICS
- Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos
- (2014) J. P. Bothma et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Discovery and Characterization of Super-Enhancer-Associated Dependencies in Diffuse Large B Cell Lymphoma
- (2013) Bjoern Chapuy et al. CANCER CELL
- Phosphorylation-Regulated Binding of RNA Polymerase II to Fibrous Polymers of Low-Complexity Domains
- (2013) Ilmin Kwon et al. CELL
- Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation
- (2013) J. Shi et al. GENES & DEVELOPMENT
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells
- (2013) I. I. Cisse et al. SCIENCE
- Genome-Wide Quantitative Enhancer Activity Maps Identified by STARR-seq
- (2013) C. D. Arnold et al. SCIENCE
- The Drosophila eve Insulator Homie Promotes eve Expression and Protects the Adjacent Gene from Repression by Polycomb Spreading
- (2013) Miki Fujioka et al. PLoS Genetics
- Three-Dimensional Folding and Functional Organization Principles of the Drosophila Genome
- (2012) Tom Sexton et al. CELL
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Spatial partitioning of the regulatory landscape of the X-inactivation centre
- (2012) Elphège P. Nora et al. NATURE
- Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene
- (2011) D. R. Larson et al. SCIENCE
- c-Myc Regulates Transcriptional Pause Release
- (2010) Peter B. Rahl et al. CELL
- Visualization of Individual Scr mRNAs during Drosophila Embryogenesis Yields Evidence for Transcriptional Bursting
- (2009) Adam Paré et al. CURRENT BIOLOGY
- A chromatin insulator mediates transgene homing and very long-range enhancer-promoter communication
- (2009) M. Fujioka et al. DEVELOPMENT
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
- The RNA polymerase II core promoter — the gateway to transcription
- (2008) Tamar Juven-Gershon et al. CURRENT OPINION IN CELL BIOLOGY
- Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription
- (2008) Takanori Amano et al. DEVELOPMENTAL CELL
- Cohesin mediates transcriptional insulation by CCCTC-binding factor
- (2008) Kerstin S. Wendt et al. NATURE
- CTCF physically links cohesin to chromatin
- (2008) E. D. Rubio et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Become a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get StartedAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started