Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus

Ancient human microbiomes

(2015) Christina Warinner et al.   JOURNAL OF HUMAN EVOLUTION

Extraction and annotation of human mitochondrial genomes from 1000 Genomes Whole Exome Sequencing data

(2014) Maria Angela Diroma et al.   BMC GENOMICS

Pathogens and host immunity in the ancient human oral cavity

(2014) Christina Warinner et al.   NATURE GENETICS

Optimization of DNA Recovery and Amplification from Non-Carbonized Archaeobotanical Remains

(2014) Nathan Wales et al.   PLoS One

Direct evidence of milk consumption from ancient human dental calculus

(2014) C. Warinner et al.   Scientific Reports

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

A Revised Timescale for Human Evolution Based on Ancient Mitochondrial Genomes

(2013) Qiaomei Fu et al.   CURRENT BIOLOGY

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA Damage

(2013) J. Dabney et al.   Cold Spring Harbor Perspectives in Biology

DNA FROM HUMAN ANCIENT BACTERIA: A NOVEL SOURCE OF GENETIC EVIDENCE FROM ARCHAEOLOGICAL DENTAL CALCULUS

(2012) C. DE LA FUENTE et al.   ARCHAEOMETRY

Improving ancient DNA read mapping against modern reference genomes

(2012) Mikkel Schubert et al.   BMC GENOMICS

Neutrophil extracellular traps: Is immunity the second function of chromatin?

(2012) Volker Brinkmann et al.   JOURNAL OF CELL BIOLOGY

Nondestructive sampling of human skeletal remains yields ancient nuclear and mitochondrial DNA

(2011) Deborah A. Bolnick et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

mapDamage: testing for damage patterns in ancient DNA sequences

(2011) Aurelien Ginolhac et al.   BIOINFORMATICS

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups

(2010) Anita Kloss-Brandstätter et al.   HUMAN MUTATION

Road blocks on paleogenomes—polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA

(2010) Patricia Heyn et al.   NUCLEIC ACIDS RESEARCH

Comparison of neutrophil functions in aggressive and chronic periodontitis

(2010) Mark I. Ryder   PERIODONTOLOGY 2000

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Viable neutrophils release mitochondrial DNA to form neutrophil extracellular traps

(2009) S Yousefi et al.   CELL DEATH AND DIFFERENTIATION

Updated comprehensive phylogenetic tree of global human mitochondrial DNA variation

(2008) Mannis van Oven et al.   HUMAN MUTATION

DNA from Pre-Clovis Human Coprolites in Oregon, North America

(2008) M. T. P. Gilbert et al.   SCIENCE