Genome-wide identification and analysis of the EIN3/EIL gene family in allotetraploid Brassica napus reveal its potential advantages during polyploidization

Genome Size Diversity and Its Impact on the Evolution of Land Plants

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The role of introns in the conservation of the metabolic genes of Arabidopsis thaliana

(2017) Dola Mukherjee et al.   GENOMICS

Genome-wide analysis suggests high level of microsynteny and purifying selection affect the evolution of EIN3/EIL family in Rosaceae

(2017) Yunpeng Cao et al.   PeerJ

Polyploidy: Pitfalls and paths to a paradigm

(2016) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

(2016) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Polyploidy and genome evolution in plants

(2015) Pamela S Soltis et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Biochemical and Structural Insights into the Mechanism of DNA Recognition by Arabidopsis ETHYLENE INSENSITIVE3

(2015) Jinghui Song et al.   PLoS One

Functional Analysis of the Molecular Interactions of TATA Box-Containing Genes and Essential Genes

(2015) Sang-Hun Bae et al.   PLoS One

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Genes with a large intronic burden show greater evolutionary conservation on the protein level

(2014) Olga Gorlova et al.   BMC EVOLUTIONARY BIOLOGY

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids

(2014) M. R. Woodhouse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

(2014) B. Chalhoub et al.   SCIENCE

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes

(2014) Shengyi Liu et al.   Nature Communications

Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize

(2013) Xiangpei Kong et al.   BMC GENOMICS

cDNA cloning, genomic organization and expression analysis during somatic embryogenesis of the translationally controlled tumor protein (TCTP) gene from Japanese larch (Larix leptolepis)

(2013) Li-feng Zhang et al.   GENE

Association of Intron Loss with High Mutation Rate in Arabidopsis: Implications for Genome Size Evolution

(2013) Yu-Fei Yang et al.   Genome Biology and Evolution

Comparative transcriptome profiles of the WRKY gene family under control, hormone-treated, and drought conditions in near-isogenic rice lines reveal differential, tissue specific gene activation

(2013) Mohammed Nuruzzaman et al.   JOURNAL OF PLANT PHYSIOLOGY

Genome-Wide Fractionation and Identification of WRKY Transcription Factors in Chinese Cabbage (Brassica rapa ssp. pekinensis) Reveals Collinearity and Their Expression Patterns Under Abiotic and Biotic Stresses

(2013) Jun Tang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

ExPASy: SIB bioinformatics resource portal

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CCAAT-box binding transcription factors in plants: Y so many?

(2012) Tom Laloum et al.   TRENDS IN PLANT SCIENCE

The Function of Introns

(2012) Michal Chorev et al.   Frontiers in Genetics

BRAD, the genetics and genomics database for Brassica plants

(2011) Feng Cheng et al.   BMC PLANT BIOLOGY

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

The genome of the mesopolyploid crop species Brassica rapa

(2011) Xiaowu Wang et al.   NATURE GENETICS

Functional consequences of developmentally regulated alternative splicing

(2011) Auinash Kalsotra et al.   NATURE REVIEWS GENETICS

Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants

(2011) Jagannath Bhattacharyya et al.   PLANT CELL REPORTS

The Role of Hybridization in Plant Speciation

(2009) Pamela S. Soltis et al.   Annual Review of Plant Biology

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Nicotiana tabacum EIL2 directly regulates expression of at least one tobacco gene induced by sulphur starvation

(2009) A. Wawrzynska et al.   JOURNAL OF EXPERIMENTAL BOTANY

Recent advances in ethylene research

(2009) Z. Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Probabilistic Models of Chromosome Number Evolution and the Inference of Polyploidy

(2009) Itay Mayrose et al.   SYSTEMATIC BIOLOGY

Rapidly regulated genes are intron poor

(2008) Daniel C. Jeffares et al.   TRENDS IN GENETICS