De novo comparative transcriptome analysis of a rare cicada, with identification of candidate genes related to adaptation to a novel host plant and drier habitats

Genetic divergence, population differentiation and phylogeography of the cicada Subpsaltria yangi based on molecular and acoustic data: an example of the early stage of speciation?

(2019) Yunxiang Liu et al.   BMC EVOLUTIONARY BIOLOGY

An association between differential expression and genetic divergence in the Patagonian olive mouse (Abrothrix olivacea )

(2018) Facundo M. Giorello et al.   MOLECULAR ECOLOGY

A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification

(2018) DAVID C. MARSHALL et al.   ZOOTAXA

Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development

(2018) Wei-Hung Pan et al.   Genome Medicine

Identification of candidate olfactory genes in cicada Subpsaltria yangi by antennal transcriptome analysis

(2018) Mengmeng Qi et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Multiple ATP-binding cassette transporters are involved in insecticide resistance in the small brown planthopper, Laodelphax striatellus

(2017) H. Sun et al.   INSECT MOLECULAR BIOLOGY

Comparative analysis of the transcriptional responses to low and high temperatures in three rice planthopper species

(2017) Hai-Jian Huang et al.   MOLECULAR ECOLOGY

Comparative transcriptome analysis reveals host-associated differentiation in Chilo suppressalis (Lepidoptera: Crambidae)

(2017) Haiying Zhong et al.   Scientific Reports

Tissue-specific Proteogenomic Analysis ofPlutella xylostellaLarval Midgut Using a Multialgorithm Pipeline

(2016) Xun Zhu et al.   MOLECULAR & CELLULAR PROTEOMICS

Transcriptome modulation during host shift is driven by secondary metabolites in desertDrosophila

(2016) Diego N. De Panis et al.   MOLECULAR ECOLOGY

Identification and Expression Analysis of Candidate Odorant-Binding Protein and Chemosensory Protein Genes by Antennal Transcriptome of Sitobion avenae

(2016) Wenxin Xue et al.   PLoS One

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

(2016) Heath A. MacMillan et al.   Scientific Reports

Intraspecific sexual mimicry for finding females in a cicada: males produce ‘female sounds’ to gain reproductive benefit

(2015) Changqing Luo et al.   ANIMAL BEHAVIOUR

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey

(2015) Jianfeng Ren et al.   BMC GENOMICS

Ecology ofMeimuna mongolica(Hemiptera: Cicadidae) Nymphs: Instars, Morphological Variation, Vertical Distribution and Population Density, Host-Plant Selection, and Emergence Phenology

(2015) Zehai Hou et al.   JOURNAL OF INSECT SCIENCE

Differences in performance and transcriptome-wide gene expression associated withRhagoletis(Diptera: Tephritidae) larvae feeding in alternate host fruit environments

(2015) Gregory J. Ragland et al.   MOLECULAR ECOLOGY

Transcriptional variation associated with cactus host plant adaptation inDrosophila mettleripopulations

(2015) Kim Hoang et al.   MOLECULAR ECOLOGY

Site-specific programming of the host epithelial transcriptome by the gut microbiota

(2015) Felix Sommer et al.   GENOME BIOLOGY

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

(2014) J. Gray Camp et al.   GENOME RESEARCH

Camelid genomes reveal evolution and adaptation to desert environments

(2014) Huiguang Wu et al.   Nature Communications

Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mousePeromyscus eremicus

(2014) Matthew D. MacManes et al.   PeerJ

Differential protease activity augments polyphagy inHelicoverpa armigera

(2013) Y. R. Chikate et al.   INSECT MOLECULAR BIOLOGY

Mechanisms of macroevolution: polyphagous plasticity in butterfly larvae revealed by RNA-Seq

(2013) Maria de la Paz Celorio-Mancera et al.   MOLECULAR ECOLOGY

A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: Osmoregulatory genes in the kidney transcriptome of the desert rodent Dipodomys spectabilis (banner-tailed kangaroo rat)

(2012) Nicholas J. Marra et al.   Comparative Biochemistry and Physiology D-Genomics & Proteomics

Population transcriptomics of cactus host shifts inDrosophila mojavensis

(2012) LUCIANO M. MATZKIN   MOLECULAR ECOLOGY

Quaternary climate and environmental changes have shaped genetic differentiation in a Chinese pheasant endemic to the eastern margin of the Qinghai-Tibetan Plateau

(2012) Langyu Gu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Oviposition and performance in natural hosts in cactophilic Drosophila

(2011) Eduardo M. Soto et al.   EVOLUTIONARY ECOLOGY

Analysis of gut microbial regulation of host gene expression along the length of the gut and regulation of gut microbial ecology through MyD88

(2011) Erik Larsson et al.   GUT

The genome of Tetranychus urticae reveals herbivorous pest adaptations

(2011) Miodrag Grbić et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

New mescaline concentrations from 14 taxa/cultivars of Echinopsis spp. (Cactaceae) (“San Pedro”) and their relevance to shamanic practice

(2010) Olabode Ogunbodede et al.   JOURNAL OF ETHNOPHARMACOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Regulation of Midgut Growth, Development, and Metamorphosis

(2009) Raziel S. Hakim et al.   Annual Review of Entomology

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Diazinon Resistance in Different Selected Strains of Chilo suppressalis (Lepidoptera: Crambidae) in Northern Iran

(2009) Arash Zibaee et al.   JOURNAL OF ECONOMIC ENTOMOLOGY

Aquaporin water channels in mammals

(2008) Kenichi Ishibashi et al.   Clinical and Experimental Nephrology

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH