标题
PmiRDiscVali: an integrated pipeline for plant microRNA discovery and validation
作者
关键词
Plant microRNA, Degradome sequencing (degradome-seq), Secondary structure, Conservation, Processing, Graphic outputs
出版物
BMC GENOMICS
Volume 20, Issue 1, Pages -
出版商
Springer Nature
发表日期
2019-02-13
DOI
10.1186/s12864-019-5478-7
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Tracking microRNA Processing Signals by Degradome Sequencing Data Analysis
- (2018) Dongliang Yu et al. Frontiers in Genetics
- Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs
- (2017) Dongliang Yu et al. Rice
- A transcriptome-wide, organ-specific regulatory map of Dendrobium officinale, an important traditional Chinese orchid herb
- (2016) Yijun Meng et al. Scientific Reports
- miRNA Digger: a comprehensive pipeline for genome-wide novel miRNA mining
- (2016) Lan Yu et al. Scientific Reports
- The use of high-throughput sequencing methods for plant microRNA research
- (2015) Xiaoxia Ma et al. RNA Biology
- miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data
- (2014) Jiyuan An et al. BMC BIOINFORMATICS
- miRBase: annotating high confidence microRNAs using deep sequencing data
- (2013) Ana Kozomara et al. NUCLEIC ACIDS RESEARCH
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data
- (2012) Jiyuan An et al. NUCLEIC ACIDS RESEARCH
- ViennaRNA Package 2.0
- (2011) Ronny Lorenz et al. Algorithms for Molecular Biology
- miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants
- (2011) Xiaozeng Yang et al. BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- Evolution of microRNA diversity and regulation in animals
- (2011) Eugene Berezikov NATURE REVIEWS GENETICS
- miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
- (2011) Marc R. Friedländer et al. NUCLEIC ACIDS RESEARCH
- MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
- (2010) Anthony Mathelier et al. BIOINFORMATICS
- High-throughput degradome sequencing can be used to gain insights into microRNA precursor metabolism
- (2010) Y. Meng et al. JOURNAL OF EXPERIMENTAL BOTANY
- miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
- (2010) David Hendrix et al. GENOME BIOLOGY
- miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
- (2009) Michael Hackenberg et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Discovering microRNAs from deep sequencing data using miRDeep
- (2008) Marc R Friedländer et al. NATURE BIOTECHNOLOGY
- Criteria for Annotation of Plant MicroRNAs
- (2008) B. C. Meyers et al. PLANT CELL
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search